Basic Information

Insect: Aldrichina grahami
Gene Symbol: -
Assembly: None
Location: Contig180:546288-548571[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.6e-06 0.00035 20.4 1.7 1 23 8 31 8 31 0.96

2 14 2.3e-06 9.2e-05 22.2 2.4 1 23 37 60 37 60 0.97

3 14 6.8e-05 0.0028 17.5 0.7 2 23 72 94 71 94 0.94

4 14 1.9e-06 7.8e-05 22.4 1.3 2 23 187 208 186 208 0.97

5 14 0.0049 0.2 11.7 1.7 1 21 214 234 214 236 0.89

6 14 0.0011 0.046 13.7 0.2 1 21 249 269 249 270 0.94

7 14 0.011 0.44 10.6 2.1 1 20 279 298 279 300 0.93

8 14 0.035 1.4 9.0 0.4 1 23 327 349 327 349 0.97

9 14 2e-05 0.00082 19.2 0.6 1 23 355 377 355 377 0.97

10 14 0.00055 0.022 14.7 8.7 1 23 383 405 383 405 0.99

11 14 0.00021 0.0085 16.0 3.8 1 23 468 491 468 491 0.95

12 14 0.00022 0.0091 15.9 4.2 1 23 497 519 497 519 0.97

13 14 0.00072 0.03 14.3 0.4 2 23 527 548 526 548 0.97

14 14 2.9e-06 0.00012 21.9 1.7 1 23 554 577 554 577 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.6e-06	0.00035	20.4	1.7	1	23	8	31	8	31	0.96
2	14	2.3e-06	9.2e-05	22.2	2.4	1	23	37	60	37	60	0.97
3	14	6.8e-05	0.0028	17.5	0.7	2	23	72	94	71	94	0.94
4	14	1.9e-06	7.8e-05	22.4	1.3	2	23	187	208	186	208	0.97
5	14	0.0049	0.2	11.7	1.7	1	21	214	234	214	236	0.89
6	14	0.0011	0.046	13.7	0.2	1	21	249	269	249	270	0.94
7	14	0.011	0.44	10.6	2.1	1	20	279	298	279	300	0.93
8	14	0.035	1.4	9.0	0.4	1	23	327	349	327	349	0.97
9	14	2e-05	0.00082	19.2	0.6	1	23	355	377	355	377	0.97
10	14	0.00055	0.022	14.7	8.7	1	23	383	405	383	405	0.99
11	14	0.00021	0.0085	16.0	3.8	1	23	468	491	468	491	0.95
12	14	0.00022	0.0091	15.9	4.2	1	23	497	519	497	519	0.97
13	14	0.00072	0.03	14.3	0.4	2	23	527	548	526	548	0.97
14	14	2.9e-06	0.00012	21.9	1.7	1	23	554	577	554	577	0.97

Sequence Information

Coding Sequence: ATGGAAAGTGAAATATCCTCTTTTATCTGTGAATTGTGTAACAAAAGTTTTTCCCAAAAATCATCACGCAATCGTCATGTTAGAGAACAACATTTACAACCAGGTTTATTCCAGTGCAAACAATGTGGATTAAGATTTTCCAAAAAATATAATCTTCAAATGCATTTAAAAAACGTGCACACCAACAAACTTAAGGGAAATGTTAAACAATTAAAATGTGCATATTGCAAGGAAATATTTACAAAATTGGCAAATTTAAAAAGACACGTTAAAGAGCAGCATGAAAGTGTAGATGATAAAAGAAGTGAATCTTCAAACATCTATGTGGCAGATGTTTTCGAATCAGATGCTCAGGCTGTAGCAGAGTTTGTTTTAAAAGAACTAAAACAATTACAAAAAGACATACAACCATCTGAGCCAGATAATGTTCCAGAACTAACAGCTAATAAAATGACCACAGTGAAGTATAAAATTATAAAAGATAATTTATATCCCTCGGGTCATTTCACACAATTAAATGTAAAAACAATTAATTATGTGGATGGTTTAACATATTTGGTATGTGAATTTTGTGGTAAAGAATTTAAAAAGCGTTACAATTTTTTAAGACACTTGAGAATTCACACAAAAATACGGCCCTTTATTTGTGTTATATGTAAAAAACAATTTGCAACTACAGCCCAGTTAAAAACACATTGTTCCATACACAAATTGCATGACAAATTTGGGCTCTTTCGTAAATTGTATAAATGTCCACAATGTAATGAAAGCTTTACAGCCATGCAACAACTAGATAAACATTTAAGTTCATCTTTATCTTGCTGCAATGTCACATTTAAATGCCCAGAATGTTTAAAATCCTATAAAACACTAAAAAGGCTTTTAAGCCATAAGCATTCAGAAAAAGATAATGAATTAGATTTGCTCAAGAAAATATTGCCCGCACCTATAAATGTAGCAGGTGTTGAAAATGATTTGTACGACTGTAATTTGTGTGGCTTGCAATTAAACGGTAGAATGTTATTGAAACAACATGAAAAAAGGCATGCAAATTTATTTAAACATCAATGCACTGAATGCCCACGAACTTATGTCACACAAGCGGCTTTAAAAATACACACTAAAGCACATTTACAGCGGACACATTTTAAATGCCACTATTGCACTAGAACATTCAAAACTGCTCAAAATTGCCGTAGTCATATGATGACTCATTTAAAGTTATTGATAAAAACTCACGCAGCATTAAATGATCAAAACGACAGCTTGGTCATATATCCTACATTTATTGAAAACGAAGAAAATTTTAAAATACAAATCACAGATACTCCTATAATTAAAACAAACAAAAAATGCACAACAGCGCCAGATCAGGGAAGTAAAGGAAGAAATATTTTAAAATATAAATGTTCAAAATGTGATAAATTATTTCGTTATAATGCCTGGCTGAAGAAACATTTTCAATATAAACACACCACAGAAGTAACTCACGAGTGCAGTAAATGTTTGCGCAAGTTTCGCACTAAACAATCTTTAAAAAATCATCTGCTGGTGCATTTAACACAACGTGTAAAACTTACCTGTCAAGTATGTGCACGACAATATGCCTCTAGTAAATCTTTAAAACTGCACTTGAGAATTCATACCCAAGAGAAACCATTTGTCTGTGACAAATGTCCAAAAATATTTCGCACTTCTGGTCACCTGATACAGCACCGACAATCGAATCATAACGAATAG
Protein Sequence: MESEISSFICELCNKSFSQKSSRNRHVREQHLQPGLFQCKQCGLRFSKKYNLQMHLKNVHTNKLKGNVKQLKCAYCKEIFTKLANLKRHVKEQHESVDDKRSESSNIYVADVFESDAQAVAEFVLKELKQLQKDIQPSEPDNVPELTANKMTTVKYKIIKDNLYPSGHFTQLNVKTINYVDGLTYLVCEFCGKEFKKRYNFLRHLRIHTKIRPFICVICKKQFATTAQLKTHCSIHKLHDKFGLFRKLYKCPQCNESFTAMQQLDKHLSSSLSCCNVTFKCPECLKSYKTLKRLLSHKHSEKDNELDLLKKILPAPINVAGVENDLYDCNLCGLQLNGRMLLKQHEKRHANLFKHQCTECPRTYVTQAALKIHTKAHLQRTHFKCHYCTRTFKTAQNCRSHMMTHLKLLIKTHAALNDQNDSLVIYPTFIENEENFKIQITDTPIIKTNKKCTTAPDQGSKGRNILKYKCSKCDKLFRYNAWLKKHFQYKHTTEVTHECSKCLRKFRTKQSLKNHLLVHLTQRVKLTCQVCARQYASSKSLKLHLRIHTQEKPFVCDKCPKIFRTSGHLIQHRQSNHNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00259963;
90% Identity: -
80% Identity: -