Agra011052.1
Basic Information
- Insect
- Aldrichina grahami
- Gene Symbol
- -
- Assembly
- None
- Location
- Contig4:2397669-2401613[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00029 0.012 15.6 0.9 2 23 115 137 114 137 0.95 2 21 0.0038 0.16 12.1 1.4 1 23 144 167 144 167 0.94 3 21 0.00028 0.011 15.6 0.0 1 23 172 194 172 194 0.98 4 21 0.0023 0.094 12.7 0.6 1 23 200 223 200 223 0.94 5 21 0.00016 0.0067 16.4 0.8 1 23 229 251 229 251 0.99 6 21 7.4e-05 0.003 17.4 3.7 3 23 259 279 258 279 0.97 7 21 0.014 0.56 10.3 1.6 1 23 285 308 285 308 0.97 8 21 0.0022 0.089 12.8 2.7 1 23 425 448 425 448 0.95 9 21 0.0037 0.15 12.1 2.3 1 23 455 478 455 478 0.97 10 21 0.23 9.4 6.5 1.4 1 19 483 501 483 505 0.82 11 21 0.001 0.041 13.9 0.8 1 23 511 534 511 534 0.89 12 21 0.00066 0.027 14.5 1.6 1 23 540 562 540 562 0.99 13 21 2.4e-05 0.00097 19.0 1.8 3 23 570 590 569 590 0.97 14 21 5.8 2.4e+02 2.0 0.4 1 12 596 607 596 612 0.83 15 21 0.04 1.6 8.8 4.9 2 23 721 743 720 743 0.95 16 21 0.0047 0.19 11.8 1.4 1 23 750 773 750 773 0.94 17 21 0.00028 0.011 15.6 0.0 1 23 778 800 778 800 0.98 18 21 0.0023 0.094 12.7 0.6 1 23 806 829 806 829 0.94 19 21 0.0024 0.097 12.7 3.5 1 23 835 857 835 857 0.99 20 21 7.4e-05 0.003 17.4 3.7 3 23 865 885 864 885 0.97 21 21 0.014 0.56 10.3 1.6 1 23 891 914 891 914 0.97
Sequence Information
- Coding Sequence
- ATGTATAAACCACTCACACTTGATCAATGGGACGATACTACGTGTAAGTTTATCGATATTTATGCAAAGTTTCCATTACTCTACGATGGAGAGCACCCGTTATATGGCAAATATGAGGATAAGCTAAAGGCCATATCGGACATTCGACACACTTTACTAAGTCAAGATAAGATAGATTTCAACGAAGAAATCATATCAGATGCCATAGATCAATTGCAATCTTGGTACTATTCAAACAAACGTCGAAAACTTAAGATTAATGACGATAAACTTGTCAAGTGCTACGAAAACTACTTAAAACTGTGCAAGTTTTTGCCGGAGAAGCGATTAAAGGTGAAGATCGTGTGTAGCATTTGCAACAAGAACTTTTATACGGAGAATAATTTTAAATATCATTTATCGAAAGTCCATCAAGTCGGAGAATTTTCGTTTCAATGCGATCAATGTGGAAAGAAACTTGTTTCGAAATCTGCTTTACAATGTCACGCACAAAGGGTTCATTCTGGAAAGAAATATCCGTGTGAGTTTTGTGGAAAACTATTTGCTATACCTTCAGAACTGAGGATCCACACACTGGTACACACGGCCGAGAAACCACATGTGTGTGAATTATGTGGCAAAGGTTTTAGATTACGAAACAATTTGGGTCTTCATGTTACACGTATGCACACCAAGATACGTGCCTTTAAATGTACCATGTGTCCTAAAGATTTTCTCAAAAATGGCGATCTAAAGGATCATATAAAAACTCATTTAAATATCCGTGACAAAATATGCGAAACTTGTGGCAAAGGCTTTACCAATTGTCATTCCTTGATACGACACCGTCAGATACACTCAGAGATTAAGAAATTCGCTTGTAAACTGTGTGACGCAAAATTTCATCAATTTGTTGGACTTAATGGCCATATGAAACGTACCCATAATATAAAACTGTATCAGAAACCATTAAATTTGAAGAAGTTGGAGGAAACTACTTTAAGTTTCATCGATGGTTATGCCAAGTTTCCTCAACTATATGATAGCAATCATCCGTTGTATGGAAACATTGAAGAAAAGTCTAAATCCTTGATGGAATTTTCCAATAAACTTTTACATGAGCATAACATTCATCTTAAAGCTGAATGTGTCTCCAATGCTATAAAACAATTACAGTTGTGGTATTACCATTCCAAAAATCACAAAGAACTGCAAAAGAGAAAACTGAATAGAGACGAAATGGAATATTTGAAAAAGTGTTCTTTTTTCCCAGCAAAACGTTTACGCGAGAAATATGTGTGCAGTATTTGTAAAAAATGTTTCAATCTGGAAATCAATTTGAAGGGGCATCTCTTTAGGTACCATCAAATAGGTGATATGCCCTTTGAGTGTGAGCAGTGTGGAAAAAAGTTTGGAAAGAAGACTATTCTTCATCAACACATACAACGAATGCACGCCAGCAGGAAGTATCAATGTGATTTTTGCACAAAATTGTTTGCGACAAAATCGGAACAGAACTTCCACAATATGGTTCACACTGCCGAAAAACCTCATGTTTGTGAATTCTGTGGTAAATCATTTAGAGTGAAGACTCAATTGGGTTATCACGTTACAGCTGTCCACACGAAAATACGTGCTTTCAAGTGCAACATGTGTCCCAAAGACTTTCTAAAGAAACGCGACTTGACGGATCATGTTAAAACACATTTAAATATTCGTGATAAAATATGTGCCACGTGTGGAAAGGGATTTTCAAATTGTGATTCATTGCGACGACATCGCCAAATACATTCCGATATTAAGCGATATGCCTGTAAACTCTGCGATGCAAAATTTCATCAATTTAAACCACTCACACTAGACCAATGGGACGATACTACATGTAAGTTTATCGATATTTATGCAAAGTTTCCATTACTCTACGATGGAGAGCATCCGTTATATGGAAAATATGAGGATAAGCTAAAGGCCATATCGGACATTCGAGACACGTTACTAACTCAACATAAGATTGATTTCAATGAAGTAATTATACCAGATGCCATAGATCAATTACAATCGTGGTACTATTTAAACAAACGTCGAAAACATAAGATTAATGATGATAAACTTGGCAAGTGCTACGAAAACTACTTACAAATCTGTAATTTTTTGCCGGAGAAGCGATTAAAAGTAAAGATCGTGTGTAGCAGTTGCAACAAGAACTTTCATACAGAGCATAATTTTAAATATCATTTATCGAAAGTTCACCAAGTCGGAGATTTTTCGTTTCAATGTGATCAATGTGGAAAGAAACTTATTTCAAAATCTGCTTTACAGTGTCATGCTCAAAGGGTTCACTCTGAAAAGAAATATCCGTGTGAGTTTTGTGGAAAACTATTTGCTATACCTTCAGAACTGAGGATCCACACACTGGTACACACGGCCGAGAAACCACATGTGTGTGAATTATGTGGCAAAGGTTTTAGATTACGAAACAATTTGGGTCTTCATGTTACACGTATGCACACCAAGATACGTGCCTTTAAATGTACCATGTGTCCTAAAGATTTTCTTAAAAATTGCGATCTAAAAGATCATATAAAAACGCATTTAAATATACGTGACAAAATATGCGAAACTTGTGGTAAAGGTTTTACCAATTGTCATTCTTTGATACGACACCGTCAGATACACTCAGAGATTAAGAAATTTGCCTGTAAACTGTGTGATGCCAAGTTCCATCAGTTTGTTGGACTTAATGGTCATATGAAACGTACGCATAATATAGTAAGAAAAGAGGCTAACAATTAG
- Protein Sequence
- MYKPLTLDQWDDTTCKFIDIYAKFPLLYDGEHPLYGKYEDKLKAISDIRHTLLSQDKIDFNEEIISDAIDQLQSWYYSNKRRKLKINDDKLVKCYENYLKLCKFLPEKRLKVKIVCSICNKNFYTENNFKYHLSKVHQVGEFSFQCDQCGKKLVSKSALQCHAQRVHSGKKYPCEFCGKLFAIPSELRIHTLVHTAEKPHVCELCGKGFRLRNNLGLHVTRMHTKIRAFKCTMCPKDFLKNGDLKDHIKTHLNIRDKICETCGKGFTNCHSLIRHRQIHSEIKKFACKLCDAKFHQFVGLNGHMKRTHNIKLYQKPLNLKKLEETTLSFIDGYAKFPQLYDSNHPLYGNIEEKSKSLMEFSNKLLHEHNIHLKAECVSNAIKQLQLWYYHSKNHKELQKRKLNRDEMEYLKKCSFFPAKRLREKYVCSICKKCFNLEINLKGHLFRYHQIGDMPFECEQCGKKFGKKTILHQHIQRMHASRKYQCDFCTKLFATKSEQNFHNMVHTAEKPHVCEFCGKSFRVKTQLGYHVTAVHTKIRAFKCNMCPKDFLKKRDLTDHVKTHLNIRDKICATCGKGFSNCDSLRRHRQIHSDIKRYACKLCDAKFHQFKPLTLDQWDDTTCKFIDIYAKFPLLYDGEHPLYGKYEDKLKAISDIRDTLLTQHKIDFNEVIIPDAIDQLQSWYYLNKRRKHKINDDKLGKCYENYLQICNFLPEKRLKVKIVCSSCNKNFHTEHNFKYHLSKVHQVGDFSFQCDQCGKKLISKSALQCHAQRVHSEKKYPCEFCGKLFAIPSELRIHTLVHTAEKPHVCELCGKGFRLRNNLGLHVTRMHTKIRAFKCTMCPKDFLKNCDLKDHIKTHLNIRDKICETCGKGFTNCHSLIRHRQIHSEIKKFACKLCDAKFHQFVGLNGHMKRTHNIVRKEANN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -