Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.034 61 3.3 0.7 18 32 9 23 3 25 0.82

2 10 0.00091 1.6 8.3 1.4 3 31 23 52 21 64 0.85

3 10 0.037 68 3.1 0.3 19 30 67 78 56 83 0.80

4 10 0.00088 1.6 8.3 1.1 8 39 88 113 81 117 0.74

5 10 0.002 3.5 7.2 3.1 18 44 123 153 119 153 0.92

6 10 0.0053 9.6 5.8 0.7 18 30 159 171 156 176 0.84

7 10 0.0088 16 5.1 0.5 5 30 175 201 172 210 0.79

8 10 0.0019 3.5 7.2 1.0 9 38 209 233 205 233 0.84

9 10 0.012 22 4.7 0.5 13 38 240 262 236 267 0.77

10 10 3.1e-05 0.055 13.0 3.1 13 44 268 296 261 296 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.034	61	3.3	0.7	18	32	9	23	3	25	0.82
2	10	0.00091	1.6	8.3	1.4	3	31	23	52	21	64	0.85
3	10	0.037	68	3.1	0.3	19	30	67	78	56	83	0.80
4	10	0.00088	1.6	8.3	1.1	8	39	88	113	81	117	0.74
5	10	0.002	3.5	7.2	3.1	18	44	123	153	119	153	0.92
6	10	0.0053	9.6	5.8	0.7	18	30	159	171	156	176	0.84
7	10	0.0088	16	5.1	0.5	5	30	175	201	172	210	0.79
8	10	0.0019	3.5	7.2	1.0	9	38	209	233	205	233	0.84
9	10	0.012	22	4.7	0.5	13	38	240	262	236	267	0.77
10	10	3.1e-05	0.055	13.0	3.1	13	44	268	296	261	296	0.87

Coding Sequence: ATGCACAAATATACAAAATATCATGTTTGCGACGTTTGTGGTCAAAAGTATAAAAACAAAGAATCATTCAAAAATCATTATGCCAAACATCAAGGTATCATTGAACCAGCCGCACAATGTTCCATATGCAATAGGTGGCTTAAAAACAAGCACAGTCTGAGGTTGCATCGTTTTGTTCATGAGAAACACACAACACCGTGTGACATATGTGGAAAGGTGTTTGATACCAAACATAGTCTGCGCAAACACAAGTCCTACTGGCACAAGTCCGACTTGAATTTACAGTGTAACTTTTGTGAGAAAGTTTTTCGACAAGAGCGCAATCTGCAAGAGCACATGGCAACGCACACTGGAGTGCAGCTTTATAAATGTCCACATTGTCAAAAAGAGTCACGTTCTAAATCGAATATATGTGCAACTATATATCGTTTGCGTAATCATATTGCATCCGTACACAATAATATATACCACCATATTTGTGACATTTGTGGAAAGAAATTCAAATCAAAGACATCCTTCCAAAAGCACTACGACGAACATCAAGGCATTGTTGAACCACCCGCTCAGTGTACAATCTGTGGTGCATGGTTGAAAAATCAACACAGCCTACGTGTACATCATCAAACACATGAAGACACACAGTTTGCCTGCGATATTTGTGGTAAATTCTTCAAAACTAAAAAGAATTTGAGTCGTCACAAAGGCTATTGGCATCGGCGAGAGCGCAATCTTTCGTGTAGCTATTGCGACAAAGTGTTTCGTGAAAAACGCAATCTTGACGAACACATGGCCATGCATACAGACACAAATCTGTATACATGTCCGCATTGTGGCAAAGAGTCAAGGTCCAAATCAAATATGTATGTACATATAAAACGACAGCATCCAGATGAATGGTGGAAATCAAAACAGGAACGTTATAAAGTAAAACCCGAAGAAGGTGGTCAAGCAGACGGAGAAGATGAGGTAAAAGAAAAGTCACCAGTAATAGACGCACCAGTTACATCAACTCTAGCACAGGAATGTATAAATACGGAATAA
Protein Sequence: MHKYTKYHVCDVCGQKYKNKESFKNHYAKHQGIIEPAAQCSICNRWLKNKHSLRLHRFVHEKHTTPCDICGKVFDTKHSLRKHKSYWHKSDLNLQCNFCEKVFRQERNLQEHMATHTGVQLYKCPHCQKESRSKSNICATIYRLRNHIASVHNNIYHHICDICGKKFKSKTSFQKHYDEHQGIVEPPAQCTICGAWLKNQHSLRVHHQTHEDTQFACDICGKFFKTKKNLSRHKGYWHRRERNLSCSYCDKVFREKRNLDEHMAMHTDTNLYTCPHCGKESRSKSNMYVHIKRQHPDEWWKSKQERYKVKPEEGGQADGEDEVKEKSPVIDAPVTSTLAQECINTE

Sequence clustering based on sequence similarity using MMseqs2