Arep023021.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- -
- Assembly
- GCA_949125135.1
- Location
- OX421248.1:555404-556927[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.37 29 6.0 0.8 1 23 148 170 148 170 0.93 2 9 0.44 35 5.8 4.4 1 23 198 221 198 221 0.93 3 9 0.00094 0.075 14.2 3.1 1 23 224 246 224 246 0.97 4 9 0.00092 0.073 14.2 0.3 3 20 252 269 251 271 0.93 5 9 2.5e-05 0.002 19.1 0.7 3 23 292 313 290 313 0.94 6 9 0.00011 0.0084 17.2 4.2 1 23 319 341 319 341 0.97 7 9 0.0048 0.38 12.0 0.5 1 23 347 369 347 369 0.95 8 9 0.00031 0.025 15.7 0.2 1 23 375 398 375 398 0.95 9 9 0.013 1 10.6 0.9 2 23 404 425 403 425 0.96
Sequence Information
- Coding Sequence
- ATGGATGTTGTAATTAATTTGCTTGTGTCTGATATTCTGGGAAGTAATAGCTACAGTCACTGTAGGTTATGCTTGGATCGTATCTCTGAAGAACAATTTGCGAGGTTTCACGACAGCGTCTCTTATTCTACAACTGAAGATTCTTTAATAGTTCGAAATGTTCTTTCGAAAGTCTTTGGAACAGAGATATGTAATGTAATCACAGGATTAGATGCGATTTGCAGCGACTGCCTAGACAAGACAATACAAACATTCAATTTGATGCAACAATATGAAAGGGTGACAGAGAAACTGCATAAATTACTCGGTAACTTGACTTCAACAATTGATAATGACATTGATGTGACCAACCAAAACCAAGTGTTGCATATTATGTGTAACAAAGACGAATCAATGATTATTGTACAAAGCAAAGAGAAAAAACCCATCATAAAAGCTCCCTTCAAATGCAGCAGCTGCAAAGAAAACTTTGATGATTTACAAGTATTCGTAGAACATAATAGAGACCATGGTTTATTTACATGTGAAAAATGTATGCACACTAGTAAAAGTGAAGAAGATGTGTTAGAACATGACACCAGTTCCACGTACTACAAATGTCGCATCTGTTCTCAACACCGATGTACAGAAGATAGTTTAAAAGACCACGAAGTTAGGACCCACGACATACACGTCTGCAAACAATGCGGCAAGTCATGTAAGGGCCTGGACAAGCTGCTTGCACATGAACAAAAACATTCTGTTAAGAACAACTGCCCGAAATGCGGTAAAACCTATATGACTAAAGAGTTCTTTGAGAAACACGTAGCACGATGTTTGGAGGACCGCGTTGAGCCTCATCCAATGAGAAGTAGGATAGtgaaaacattgttttgccCCCAGTGTAATAAAGGGTACAGCACACCATCCGGGTTACACGTTCATATGAAATTTGTGCACGGGAACGCAAAGCATCATGTTTGCAAGGAATGCGGTAGAAAGTTTACAGCTCGCTGCTATTTGAAAGTTCACATGGTGACCCATACGAAAGAGAAAAACTTTCTATGTAATCTCTGTGACGGGAGGTTCGTCTCTAAAGAGGCACTTTTGTACCACAACCGGAGACATACGGGTGAGAAGCCATATTCCTGTGATGAATGTGGAGAAAGATTTGTCAATGCATCAGCCAGAGTAGAACATATAAAATTCAAACACATCGGGCCAACATTGAGTTGTGAGGTGTGTTCCAGAAAATTTgtcactaaaataattttacggAATCATGAGAAAAAACACTACGACCCATCGAATAAACTGTATATTGGGAGAGCTGATATTCCTTTTAACAGAGGAGCTGCTCATGAGAGTGACACATAA
- Protein Sequence
- MDVVINLLVSDILGSNSYSHCRLCLDRISEEQFARFHDSVSYSTTEDSLIVRNVLSKVFGTEICNVITGLDAICSDCLDKTIQTFNLMQQYERVTEKLHKLLGNLTSTIDNDIDVTNQNQVLHIMCNKDESMIIVQSKEKKPIIKAPFKCSSCKENFDDLQVFVEHNRDHGLFTCEKCMHTSKSEEDVLEHDTSSTYYKCRICSQHRCTEDSLKDHEVRTHDIHVCKQCGKSCKGLDKLLAHEQKHSVKNNCPKCGKTYMTKEFFEKHVARCLEDRVEPHPMRSRIVKTLFCPQCNKGYSTPSGLHVHMKFVHGNAKHHVCKECGRKFTARCYLKVHMVTHTKEKNFLCNLCDGRFVSKEALLYHNRRHTGEKPYSCDECGERFVNASARVEHIKFKHIGPTLSCEVCSRKFVTKIILRNHEKKHYDPSNKLYIGRADIPFNRGAAHESDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -