Arep025810.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- -
- Assembly
- GCA_949125135.1
- Location
- OX421252.1:4917242-4930523[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0072 0.57 11.4 0.9 1 23 461 483 461 483 0.98 2 11 0.39 31 5.9 2.2 1 23 490 512 490 512 0.96 3 11 0.22 18 6.7 3.9 1 23 516 538 516 538 0.97 4 11 0.0008 0.064 14.4 3.3 1 19 543 561 543 563 0.98 5 11 0.0053 0.42 11.8 0.1 3 23 571 591 570 591 0.97 6 11 0.011 0.91 10.8 0.1 3 23 604 625 603 625 0.93 7 11 1.3 1e+02 4.3 0.2 1 23 647 670 647 670 0.94 8 11 5.8e-05 0.0046 18.0 0.2 3 23 687 707 685 707 0.96 9 11 0.1 8.2 7.8 0.1 2 23 714 737 713 737 0.90 10 11 1.3e-05 0.0011 20.0 1.4 3 23 744 764 743 764 0.95 11 11 0.00086 0.069 14.3 0.6 1 23 770 793 770 793 0.96
Sequence Information
- Coding Sequence
- ATGGTAGATCCCATTGATATTTGCAAAATCTGCTTACGTACCGACGTGAAACTCAAGGAGATCGATAAAGAATTATCAAATTACCATTATGCTGTTACTGATTTTGCTtTATTCCACATTGACTCTCGTCTTTGCCCCGAATGTGAGCACCTGCTGAAAAAATCGTACAACTTCAATCAGAAATGCATAAAAGCGGCCAAAGTATTACAGCTATGGCACAGAAACATGGTCTATGGAAAAACAAACAGAAAACTATTGAGTACCCTTCACACGCAAGTACCCCAACTGCCGCTACAGATTTACACTCCGGACAACACCAGAATATACACTTACGAAGAGCCGGAACCAAACCTAATACTTGAAGAATTAATTTCGGAAACAGACTCAAACAACagtataaaaaaggaaatagaAATTGACCTACCTGAAATAGGGTCAAAAAACCTAGTCACAGTAAAATTAGAAGAAACAAACATATTCCAAGAAGTTTTAATACGGACAAACATAAACGGAACGGCAGCAGATGATACAGAAATAGAATTAATAGATGAAGATGATACAGAACAAAATGACGGCATAGATGATGCAATAGCAGATGACGCAAGTCTGAGCAGCGACGATGAATGCTTAGCAGCAAAGAAAATGCGCAGAAGTCAAGAATCATTCCATTCTGAAGCAAACAACACGGAAAAGATAAAAAGCGTAGCAAAGAAGAAGCACGAGAAAAAGGCAAAGAAGATAACTGACGACGAAACTGAAGTCGAGAAATATATAATAGCTAAATTACAGGATATGAATGAAGATCTTTGTATGATCTATAAAAATTGGGAAAAAACATCGTTAACAGATATGCCTGCTATATCGCTGGCAAAAGATGATAGTACGACAAAAAGAAGTATGGCAAAGAAGAAGTTGGTTGACAAAGAAGATTTGAAGGGGCAGAATGTGAAAAAAGATGTGGTGGCGAAGTTAGCGAGTTTGAGCTCCGATTTAGACTCTATTAGGGAAAATTGTGCAAAGCTAATCAACTATAAAGAAGGACTAATGAATCCCAAAGAAAGGTTAAGAGCAGAGTTAACCACTAAATTCTCTTCCTGCGGTGAACTGAAGACCGAGGATGGCTACGTCATCAACAAGGAAACCATAATGAACTGCTTTGACCGAGTCTCAGAGTGTCTCATGAGGAGGCTGTGGAGGTTCATGCATGGTAAAGCAACCCTAGAAGCGCGCGCAATAAACACCCTTAAACACATACAGAATAAGTACCAAAACGAGTACCAGTATGAAACCGTGTTCAATATTGAGTACCTCAACACTAAAGAGAAGGTGGCAGAAGAATTTGAAAATAGGCGTTCGTACCAATGCTTCCTAAATGCCAAATATAAGTGCGAGCTGTGTTATCTCGGATTTAAATATGAGGCGCAGATGGAAAACCATAAAAACAGTCACGCGgAGGGTGCGGGCGATTTCGCCTGCCCCACTTGTGGCGTGCgacataaaagtaaaaagagCCTCGACACACACTCGAAGAGCCACGAAGCAGTGTACAAATGCAAGCTGTGCCCACTCGTCACATACTACAGGTACTCCATGATGAACCACTACCACCAACACGAGGGCGTGGAGTACAAGTGCGAACAGTGCGACACCACTTTCAGGAGTAAGTCTGCCTACAAGACGCACTGCGGGCTGCGGCACGGCGCCGCCGCGTGCACCACGTGCGGCCGCGCGCTGCGGAGCCGCCGGGCGCTGGAGGGGCATCTCGCCACGCACGAGCGCGAGACCCTCGCCCCGGTTTCCCCGGCGCCGTGTGTCGCGTGCGGGCTCACATTCGCCTCGCGGCAAGCGTACCAGAGACACGCGAGGAATACTCACAGCGGACCTGCGCAAACaatGCAAAAAGCGAAAGAAGGGGGAGTGCCAAAGAAAAAGCCAGTCCACACGTGCCGAGTGTGCAACGCAGTCGGGAACAGCATAGGCTGGCTCACCCTCCACTTCCGGTTGGAGCACCCGGCCGTCGACATGGCGCTCGAGTACGCGGACCGGCAGCGACATCTGTGCGAGATCTGTGGGAAGGGGTATGCGAACGTGTACAACCTCCGCGACCACCTGGCCACCCACGCGGGCGTGCGCGCGCACGCGTGCCCGGCGCCGGCGTGCGGCGCGCGCTTCCACCGCGCCGTGAGCCTGGCGCAGCACGCCGCCACgcacgcgccgccgcgccgcgcctgcGCCGCCTGCGGGAAGCGGTTCCACTCGCAGAGCAACCTCAACAACCATATGCGGGGCCACACCGGCGACCGCCGCTACAAATGCAGCCTCTGCGGTAAAGGCTTCCTTCACCGAAACGCACTAAACGAGCACGTTCGAGGCGTGCACTACAAACTGAGACGGGTCAGGAAGAGGACGGACGGGGATAAGGCGAGGACAAGTGGGGACGGCTCGCATTAA
- Protein Sequence
- MVDPIDICKICLRTDVKLKEIDKELSNYHYAVTDFALFHIDSRLCPECEHLLKKSYNFNQKCIKAAKVLQLWHRNMVYGKTNRKLLSTLHTQVPQLPLQIYTPDNTRIYTYEEPEPNLILEELISETDSNNSIKKEIEIDLPEIGSKNLVTVKLEETNIFQEVLIRTNINGTAADDTEIELIDEDDTEQNDGIDDAIADDASLSSDDECLAAKKMRRSQESFHSEANNTEKIKSVAKKKHEKKAKKITDDETEVEKYIIAKLQDMNEDLCMIYKNWEKTSLTDMPAISLAKDDSTTKRSMAKKKLVDKEDLKGQNVKKDVVAKLASLSSDLDSIRENCAKLINYKEGLMNPKERLRAELTTKFSSCGELKTEDGYVINKETIMNCFDRVSECLMRRLWRFMHGKATLEARAINTLKHIQNKYQNEYQYETVFNIEYLNTKEKVAEEFENRRSYQCFLNAKYKCELCYLGFKYEAQMENHKNSHAEGAGDFACPTCGVRHKSKKSLDTHSKSHEAVYKCKLCPLVTYYRYSMMNHYHQHEGVEYKCEQCDTTFRSKSAYKTHCGLRHGAAACTTCGRALRSRRALEGHLATHERETLAPVSPAPCVACGLTFASRQAYQRHARNTHSGPAQTMQKAKEGGVPKKKPVHTCRVCNAVGNSIGWLTLHFRLEHPAVDMALEYADRQRHLCEICGKGYANVYNLRDHLATHAGVRAHACPAPACGARFHRAVSLAQHAATHAPPRRACAACGKRFHSQSNLNNHMRGHTGDRRYKCSLCGKGFLHRNALNEHVRGVHYKLRRVRKRTDGDKARTSGDGSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -