Arep008542.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- ZNF296
- Assembly
- GCA_949125135.1
- Location
- OX421229.1:1614337-1623611[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.6 1.3e+02 4.0 0.3 2 23 6 27 5 27 0.96 2 12 6.4e-05 0.0051 17.9 5.0 2 23 1147 1168 1146 1168 0.97 3 12 0.0052 0.41 11.8 3.0 1 23 1174 1196 1174 1196 0.98 4 12 0.0059 0.47 11.7 8.9 2 23 1203 1224 1202 1225 0.95 5 12 3.3 2.6e+02 3.0 0.0 6 23 1239 1256 1238 1256 0.97 6 12 0.022 1.8 9.9 3.0 3 23 1263 1284 1262 1284 0.97 7 12 0.0047 0.38 12.0 0.2 2 23 1301 1321 1300 1321 0.97 8 12 0.00014 0.011 16.8 0.8 1 20 1327 1346 1327 1349 0.91 9 12 0.0036 0.29 12.3 0.2 1 23 1357 1379 1357 1379 0.98 10 12 0.006 0.47 11.7 7.2 1 23 1385 1407 1385 1407 0.98 11 12 5e-06 0.0004 21.3 0.8 1 23 1413 1437 1413 1437 0.97 12 12 0.0011 0.086 14.0 5.1 1 23 1443 1465 1443 1466 0.95
Sequence Information
- Coding Sequence
- ATGGATCAGCTGGTGCAGTGCCCTGTGTGCACACTGTTCCTCCACAATGGCATGTCTCTCGAGTCCCATCTGGACACGCATCCCAAAGACCAGGTCATAAAAGCGCTATGCAGTATAGCAAATAAAACCATCAGCTGTGCAAGCAGTAGGACATCCACACCTGGTAACTCTGACAGATCTTACAGGAGTAGGTCTCAGACCCCTGCTGCCGAGGACAACGGACGCTGGAATAGTGCTCATAAAAACTCAGATCATGACCGCTACTGGCCCAGAACACCTAGCGGGTCATCAAGTAGAGCTCCCAGCACATGTAGAACCCCAAGTAGGAATCAGAGCAGGACTCCAAGATCGTCATCATCGGCCAACATTTCCCGAAATTGCACCCCCGATATTAGGATGGTAGATAATATATGTTATGAAACTACAACAGTCAGCAGTTCATCACAAAACTCGAACCAATCCCATTCAAATCCTAACAACCCCCCTTTGACAATGAAAGCTGACAAAATGCAGCAAACATACCCACCGCCTCTATCTGAATTTGAACAGAAGTACCAATACTACCCGGACCAGCAAGAGGACAGGGAAATCAAATATTCTCGCAGTGCTGAGTACAATGCCATGGATGTTAATAGTGTGTTTTCTTACAATGTGCCAACAGTCGGAGCTGCGGGTGTCAAGTTACACCCTAATACGAATGTAATGCCTAATATGTCCAGGAAAAGAAATGAAGCTACTAAAGTGCAGATGCATAAACCGAGCAACTTAATGAGtatagtaaaaaacaacatGGGAGGAATGCAATACATGGGGCATGGAGTGAAGCCCATGCATGTGATGGTAGGACCCTCGACACCTGGTTTTGTGCAGAAGAATGTGCAGAATAGTATGATGATGAGTGGTGCTCTGCCGTCTTCCCAAGTTCACCGAGATGCCAAAGCCGTTCCTCCTATAGTCCAAAATCATTTCAATCAGCTAAATTCTAGTACATTTACTCCGGGTACTACTGTAGTAACTCAGAACTCTCAGTATTTCTACCAGGAAATGGTACAGAACATTGATCCAAAGACTTTCATTCCCAGCATGCCTGCAGTGTTCTCGGGGCAAGAGAATGTCACAAACGTCGCTCAAACTAGCTCAATATACCAGAATGTGATGCTTGTTGATCAGTTTGGTAACACATCTTGTATGTACTCAACGCCACAACAGATGATGCCCAAACAGTCGGTGCCTCAAatgttctctgacacgagtgTGCTTGTACCTAATACACAGAAACAGGGTTCTAGTTTAGCAGATCAGAATAAAACACTGGTTATTGAAGTCAGCCCCATCATCCCCAGCTCACGAAGTTCCCGTATCAGTACAGCTAGCAAGGTGCTGTCGCGACCTCCTCGAAAGACTTCAGCAATAGTTGCCAATTTCACGCTACCTAAAGCTGAAGCTCCAAATGTCACAATTACTGAAAAGATCGACCCCCAGAGCGAAGGCTCAGGGACCACTAGGGGTCTCAAGATTCTTAGTAATATAAAGGTGGAAGTTCCAGTAcaacataacaaaaatatgataaacACTGTGATGGACCTGACGGGGTCTAGTGATCGCGATTCTCCTGACAGGTCTATGTCGCCTGAGAAGATCTTGCCTGACATTGAAAAATACGAGCAGAAGTCTTCCCGTGCTTTCATCGAACCCTCCATGAGCCGCGGCGACAGCTCCAGGGATAGCTCGCAGTCCTTTGCAGAGCTCAAAAAGATCGCAAGTTCTACCTCAAACAAAGACTCTAGCAAAACTAATAGCATAGATAGTAAAATAGATATGGAATTCAGCGACAGCTGTCCCGTACCAGACTTAATATGTAACGAGAAGCCTTCCATATCGCCGATCAGCGAGTTGTCCGAGAGTGGGGACAACTCCACCGATCGCTCCGTGATATCTCCCAAGCCcgaaaatactaaaattagtATCGGATTAGATAGcaaagcaaagaaaattcaattGCCAATAAAGCCATTTAGGAGTACTCCACTAAGACTGAATAACATTTTTGTGAAGAAAAGTAAGAAAGTTTTGcaaattaagaatttaaaaatgaTGTCCAACAGCAGTCCGAGTAAGCAGGTCGATGAACCGATGCCATGCTCGTCTAAGACGCCTGTCAGCTTCACGAATAAAGTTCAAAAGGCAGAAAGTAAGAAGTCTATCTTGAAAACGATTTCGATAGAAGAAATCAAAAGTAAAGAAGAGGTGGCGGGGTTTGACGCGGATCAGGCCGAGGACGTCGCCCAGTTCCCGAGCCCGCAGAAGACGAATCCGAAGGAGGAAGTCGTTCACGTGAAAGAAGAGTTCTCCTCGAGCAATGAGACGTTTGAAAACCAAGAGCATTCTGATATGACGCCTCTAGATCCTCTGCGGCCTTCGATCAACGTCGTCAGCTACGAGAACATGTCGCCGAGAGACTTCGACGAGGAGTCCAGCCACCGCGAGCTGCTGGACCTGGAGGGGGCGAGTAAGACCAAGCAGTTTGTCAACATGATGAGTGAAAACTACTTCGGGGATAATATTTACGAGCACTATTTTACACCGGATAGAGTGGAAGCTTTCGACGACAAAGGGCCGACGGTGTTCAAAGACAATGCGAAAGAAGCGTTCTCGTGCAACATTTGGGGAGAGCCGTCGACGAAGGAAAATGAGTTCGTGTTGCCGAATTTTATCCACGAGAGTTACAAAATCGCGGAGAGCGGGATGGATTACGCGGACGGGGAAAGAGACGAAGCGGCCATGGACGAGAAGGAGCAGGAGAGTAAAGCAGAACTGTTGAACGAGGCCCGCAGCGACGGGGAGCCCACGTTGAACATCTGCGCCGACGAGCGCATGCCGCCGCGCGGCGAGCTCAGCGGCCAGGAGAGCAACGGAGACATGGACTCCTCTTGGAATGGGACGTACTCGGAAACGACGCCAGCGGAGCCCTACGACCTGATGGCGCGTGAGAGCTGGGTCTCGGACGGCTCGGAGCTCGACGTCACCGACAAGCAAGACAGCCTCGAGGAGATGCCCGTGTTCCCCCCGGCGCGGCAGTTCGCGTGCGGCTGCTGCAGCGCCACCTACCCCTCCATGAAGGAGCTCCGCTCGCACGGAGCCCTGGCTCatccgccgccgcccgccgcctccTACGCCAGGATCAAGAAGGAGGAGAAGATCGATGATAGCGGCCTGTCGTGTGCCACGACCCTGCTCTCCCTGGACTCGAAGGAGACCATCTCGTCCAGCATCCTGCAAGTGTACGATACATTAGACGAGGCCAAGCCCGGGCTCGACCTGCGCGCGCTGCTCAAGCAGGAGACCAAGCGCAAGCGCAGGGACTTCGTGTGTCCCACCTGTAAAGTAGACCAGTTGAACGACGCCGCATTCACGGCTCACCTGCGCACGCACCCGCTGGAGTGCCTCAAGTGCGGGAAGTGCTTCCACCGCCGCGCCAACCTCAACCTGCACCTTAAAACGCATCTCGGCATCAAGAATTACAAaTGTGAGATCTGCGAGAAGCGGTTCCTGACCCGCCAAAAGCTGAATGAGCACCACAACGTGCACACGGGCCGCGCGCCCGTCAAGTGTACCCACTGCGACCACACCTTCCGCCGCTTCTCCAACATGGTGCAACACAGGAACCGTCACCACTTCCACAAGCGGCCCGTGCCCCGCGACTACGTGTGTGCATGCGGCCTAGTTCTCCCGACGCGCGCGCGCCTCGCGAAGCACCGCGAGACGCACGAGGCGAAGCCGAAGGCCTGCCTGCATTGTCCCGACAAGTTCGTGCACTCGGCCTCGCTGACGCGGCACGTGCGCCGCAAGCACAACGCCATGTACATGACGGCGCCGTCGGCTTCCAAGGCGGCCAACGTGTCCTGCCCTATTTGTAAACAGGTGTACCTCCGCACGAACCTGCGCGCGCACCTGCAGACGCACAGCGGCAAGCGGCCCTTCTCGTGCGTGGTGTGCAACAAGGCCTTCACCACCAAGTGGAACCTGAAGCTGCACCGCTGGACGCACGTGTCGCGCTCCGCCAAGCCCTTCAAGTGCGCGCTCTGCAAGGGCGCCTTCATCCGCCGCGCCGAGTACGTCTCGCACATGAACTCGCACAAGTCCGTCCGCCCCTACACCTGCAACTACTGCGGCTGCCAGTTCATTAGGAAATACAACTGCCAGCGGCACGTCAGAGAACACGAGACGGCGAAAAAGTACGTCTGCGAGGTCCCCGACTGCGGTAAGTCGTTCCATAGGAGCTACTACCTCTCCGAGCATATGAAGGTCCATAGCGGCGCTCGACCGTTCTCCTGTAATATCTGCGGGAAGACGTCGAGTAATAAGTCCAATCACAATAAGCACGTGAAGATACATCACGCGAGGGAGCCGGTCGCCACGGAGGCGTAG
- Protein Sequence
- MDQLVQCPVCTLFLHNGMSLESHLDTHPKDQVIKALCSIANKTISCASSRTSTPGNSDRSYRSRSQTPAAEDNGRWNSAHKNSDHDRYWPRTPSGSSSRAPSTCRTPSRNQSRTPRSSSSANISRNCTPDIRMVDNICYETTTVSSSSQNSNQSHSNPNNPPLTMKADKMQQTYPPPLSEFEQKYQYYPDQQEDREIKYSRSAEYNAMDVNSVFSYNVPTVGAAGVKLHPNTNVMPNMSRKRNEATKVQMHKPSNLMSIVKNNMGGMQYMGHGVKPMHVMVGPSTPGFVQKNVQNSMMMSGALPSSQVHRDAKAVPPIVQNHFNQLNSSTFTPGTTVVTQNSQYFYQEMVQNIDPKTFIPSMPAVFSGQENVTNVAQTSSIYQNVMLVDQFGNTSCMYSTPQQMMPKQSVPQMFSDTSVLVPNTQKQGSSLADQNKTLVIEVSPIIPSSRSSRISTASKVLSRPPRKTSAIVANFTLPKAEAPNVTITEKIDPQSEGSGTTRGLKILSNIKVEVPVQHNKNMINTVMDLTGSSDRDSPDRSMSPEKILPDIEKYEQKSSRAFIEPSMSRGDSSRDSSQSFAELKKIASSTSNKDSSKTNSIDSKIDMEFSDSCPVPDLICNEKPSISPISELSESGDNSTDRSVISPKPENTKISIGLDSKAKKIQLPIKPFRSTPLRLNNIFVKKSKKVLQIKNLKMMSNSSPSKQVDEPMPCSSKTPVSFTNKVQKAESKKSILKTISIEEIKSKEEVAGFDADQAEDVAQFPSPQKTNPKEEVVHVKEEFSSSNETFENQEHSDMTPLDPLRPSINVVSYENMSPRDFDEESSHRELLDLEGASKTKQFVNMMSENYFGDNIYEHYFTPDRVEAFDDKGPTVFKDNAKEAFSCNIWGEPSTKENEFVLPNFIHESYKIAESGMDYADGERDEAAMDEKEQESKAELLNEARSDGEPTLNICADERMPPRGELSGQESNGDMDSSWNGTYSETTPAEPYDLMARESWVSDGSELDVTDKQDSLEEMPVFPPARQFACGCCSATYPSMKELRSHGALAHPPPPAASYARIKKEEKIDDSGLSCATTLLSLDSKETISSSILQVYDTLDEAKPGLDLRALLKQETKRKRRDFVCPTCKVDQLNDAAFTAHLRTHPLECLKCGKCFHRRANLNLHLKTHLGIKNYKCEICEKRFLTRQKLNEHHNVHTGRAPVKCTHCDHTFRRFSNMVQHRNRHHFHKRPVPRDYVCACGLVLPTRARLAKHRETHEAKPKACLHCPDKFVHSASLTRHVRRKHNAMYMTAPSASKAANVSCPICKQVYLRTNLRAHLQTHSGKRPFSCVVCNKAFTTKWNLKLHRWTHVSRSAKPFKCALCKGAFIRRAEYVSHMNSHKSVRPYTCNYCGCQFIRKYNCQRHVREHETAKKYVCEVPDCGKSFHRSYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHVKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00143318;
- 90% Identity
- -
- 80% Identity
- -