Arep025579.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- -
- Assembly
- GCA_949125135.1
- Location
- OX421252.1:1636684-1644059[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0011 0.085 14.0 1.8 1 23 89 111 89 111 0.97 2 9 0.64 51 5.3 1.7 1 13 115 127 115 138 0.82 3 9 0.019 1.5 10.0 5.2 1 23 142 165 142 165 0.95 4 9 0.00012 0.0096 17.0 1.8 1 23 168 191 168 191 0.98 5 9 9.9e-05 0.0079 17.3 0.7 1 23 194 217 194 217 0.93 6 9 0.21 16 6.8 1.4 3 21 226 244 225 249 0.92 7 9 4.1e-05 0.0032 18.5 0.9 2 23 258 280 257 280 0.94 8 9 2.7e-06 0.00022 22.2 1.8 1 23 286 309 286 309 0.98 9 9 0.00019 0.015 16.4 0.5 3 23 322 342 321 342 0.97
Sequence Information
- Coding Sequence
- ATGGATTCATTAGAAATCAAACATGAATTCGAGTGCGACAGCCGTTTACAGTGCCGCTCCTGTCTCAGCATCGGTAGAAAACTCGTGCCTCTTTTCCAGTACACcgacatttatttaaaactgaCTACTGGAGTGTACCCGCATCTTCCGACACAATCAACAGAAATATGCTGGGAGTGTAAATCGTTACTAAGAAAAGTGTTGTTGTTCCaagaaaaagtgaaaaaagCTTGTGAACTGCTTGTAAATAACCAGcTTTCAATTTACACTTGCGACATCTGCAAAACTAAAATGTCTAATAAGCGCCATCTATCGGCCCATATCGCACAACATTACAACGTCTACAAATGTAAACTATGCGGCCATATTTGTAGAAatgaagaaatcaaaatttggCATTTTCAAAGCGAGCATAAAAAGTTCTACAGGTGTATCAAATGCGGCTTGAAATTTTGcaaCCGCCGCGATTTCTTCAAGCACTACAAAGAGTGGCACGAGAAGTACGTCTGTGATTATTGCGGAGTCAGTTTCAAGATGAGATATTGCATTGAGGACCATATCAGgaaaCAGCATTCCCCCTTCACTTGCAAGCTTTGTGACAAGACGTTTGCTCGCTACAATGGTTTGTGGCTACACAATAAGCTAATACACTTGCCCTCCACTTCCCCCGCCTATTGTGTGGAGTGTGATACTACATACAAGGATATTTATAGATACAAATGGCACTTATGTAACAGCGTGAAACATACGCCTAAGAAAAAAATCAGTGTTCCTTGCCCGGACTGTGACAAAACGTTCACAAAGAAAATCTACATGAAAGACCATCACAACCTGGTCCACCTGCAGCTGGTTAGATTCAGGTGTGAGCGGTGTGACAAGAACTTCATCCGTAACGCAGAATTAGTGAAGCATAGACGACGCAAACATGAAGGCATTCGACGGGTACCTCCTAGAAACAAGATTTGTTATATTTGTGGGCGGGGGTTTACGaCAAACAAGATTCTACGGAACCACGCACGTACGCACGAAACAAGCAAAGCAAACgcaaaataa
- Protein Sequence
- MDSLEIKHEFECDSRLQCRSCLSIGRKLVPLFQYTDIYLKLTTGVYPHLPTQSTEICWECKSLLRKVLLFQEKVKKACELLVNNQLSIYTCDICKTKMSNKRHLSAHIAQHYNVYKCKLCGHICRNEEIKIWHFQSEHKKFYRCIKCGLKFCNRRDFFKHYKEWHEKYVCDYCGVSFKMRYCIEDHIRKQHSPFTCKLCDKTFARYNGLWLHNKLIHLPSTSPAYCVECDTTYKDIYRYKWHLCNSVKHTPKKKISVPCPDCDKTFTKKIYMKDHHNLVHLQLVRFRCERCDKNFIRNAELVKHRRRKHEGIRRVPPRNKICYICGRGFTTNKILRNHARTHETSKANAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -