Basic Information

Insect: Alcis repandata
Gene Symbol: -
Assembly: GCA_949125135.1
Location: OX421244.1:4104365-4123209[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.024 1.9 9.8 0.1 3 23 275 296 273 296 0.96

2 10 0.0025 0.2 12.8 0.2 3 23 320 340 319 340 0.96

3 10 0.0011 0.084 14.0 0.1 1 20 344 363 344 366 0.96

4 10 0.029 2.3 9.5 0.8 1 22 371 392 371 392 0.96

5 10 0.029 2.3 9.5 0.8 1 22 402 423 402 423 0.96

6 10 0.0029 0.23 12.7 1.3 1 23 433 456 433 456 0.98

7 10 0.00022 0.017 16.2 0.2 2 23 485 507 484 507 0.96

8 10 0.00061 0.048 14.8 0.5 2 23 513 534 512 534 0.92

9 10 8.4e-08 6.6e-06 26.9 1.3 1 23 540 562 540 562 0.99

10 10 5.9e-05 0.0047 18.0 3.8 1 23 568 591 568 591 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.024	1.9	9.8	0.1	3	23	275	296	273	296	0.96
2	10	0.0025	0.2	12.8	0.2	3	23	320	340	319	340	0.96
3	10	0.0011	0.084	14.0	0.1	1	20	344	363	344	366	0.96
4	10	0.029	2.3	9.5	0.8	1	22	371	392	371	392	0.96
5	10	0.029	2.3	9.5	0.8	1	22	402	423	402	423	0.96
6	10	0.0029	0.23	12.7	1.3	1	23	433	456	433	456	0.98
7	10	0.00022	0.017	16.2	0.2	2	23	485	507	484	507	0.96
8	10	0.00061	0.048	14.8	0.5	2	23	513	534	512	534	0.92
9	10	8.4e-08	6.6e-06	26.9	1.3	1	23	540	562	540	562	0.99
10	10	5.9e-05	0.0047	18.0	3.8	1	23	568	591	568	591	0.98

Sequence Information

Coding Sequence: atgggTACATCGAAGAAAAAGAAGATCGATGAGAAAAtcaaatctaaaattaaatgttCCCTGGCCTATGTTGATCCCGCTTTGTGCCGGTGTTGTGGTTCATTAACAAAATTCAGAGTTGTAAACGGGAATTACTACAACTTGGGTCAGCTAGAAGTGTACTCAGACATGATCAAGAATTGTTTCGGAATtgagCTGTCAAAACTAGACGGTAAGCTAGCGGAGAGGCTGATATGTGCTCCGTGCGTGAACCGAGTCCGCGATGCTTGCAACTTCAGGCTTCAAGTGCACAACACTGAGAAAGAGTTCTTACTCAAACCAAAGACAATATCTGCATCCAAGATACGCGTCAAATCCAATACAGAGATGAAACAAGCAAAGAATCTTGGAGTCTGTGACATGACAATACCAGATGGACTAGATGATGAGCTAGACCTTTTACAGCTTGAAGAATATTATGCACTTGgCGATGAAATGGAGCCTCGCGACACTAACGGGTGCTCCGGCGAGGACTCGCCCGTCGAGACCTACGAGAATAAAAGGCCGCGGTGGAACGAAGTTCAGCCCGTGAAGAAAGTTAAGGAGAAACCGGCCTCTCATACTTTAGATAATAAAAACTACATGTACAACGCAGTCTCGATACTGCGCTATTCCCACGCGTGCCCCTTCAAGAACCGGTTCAACCACATCCTGTGCCACTACTGCTGCCAGTACTTCCTCGACCCGGCACTTTTGAGGGAACATACGAACCAGCACACGTATAAGGAGTTTAAGAATACTACTAGAAATAGGTACATAAAAATAGACATAACAAGGATCGACTGCAAGCTTTGCCCAGAGAAAATCGACAGCCTAGACGACTTCAAACAGCACTTAATGACCGTTCACAGAAAGCCATACTTTCCCCAAAGCAAAGACGGGGTCATACCATTCAAGTTGATACAAAACGTTAACATTTGCACGCTGTGCGGGGAAGAGTTTCAACAGTTTAAAGGATTGGTGCGGCATATGGACCAGCACTTCAGTAATTACGTGTGTGAAACTTGCGGGATGGGCTTCATGGATGAGAAGAGTCTCCAAAAGCACCTCCCCGCGCACTCCGGGCGCCGCTACCCGTGCGACGAGTGCGGGAGTTCACTGAAGTCTGAGTACACTCTGCAGTGTCATATGAGGAGAAGCCTCCCCACGCATTCCGGGCGCCGCTACCCGTGCGACGAGTGCGGGAGTTCACTGAAGTCTGAGTACACTCTGCAGTGTCATATGCGGAGAAGCCTCACCACGCATTCCGGGCGCCGCTACCCGTGCGACGAGTGCGGGAGTTCACTGAAGACTGAGTACACTCTGCAGTGTCATATGAGGAGGATACACGGTCGGAACGAGGCTGTTAGCGACTTGTCTGACGCCGAGCCGGGGAAGGAGCCCGAGTCGCCCAAGGAGCCCGAGCCTGCGCTACCCTGCCAGGGCTGCGAACTgACTTTCAAATCGCGCAGGTATCTGGCAATACATGTGAGGAGAGTCCATATGAATTACAGACAGGTATGCCAAGTGTGCGGTCAGAAGTTCTTCACTCGCTTCGCTCTGAACAACCACATGCCGACACACACCGGCGAGAGAAACTACAAGTGCAAGGAGTGCGGCAAAACTTACCCGCGACTCAAGACGCTGAAGGAACACATGCGGATACACACTAACGACAGGAGATACAGATGCCATATTTGCGGGCAAGCCTTCATCCAAAACTGCAGTTTGAAAGGGCACTTGAAGAGCAAGCATCCTGAATACAGATAA
Protein Sequence: MGTSKKKKIDEKIKSKIKCSLAYVDPALCRCCGSLTKFRVVNGNYYNLGQLEVYSDMIKNCFGIELSKLDGKLAERLICAPCVNRVRDACNFRLQVHNTEKEFLLKPKTISASKIRVKSNTEMKQAKNLGVCDMTIPDGLDDELDLLQLEEYYALGDEMEPRDTNGCSGEDSPVETYENKRPRWNEVQPVKKVKEKPASHTLDNKNYMYNAVSILRYSHACPFKNRFNHILCHYCCQYFLDPALLREHTNQHTYKEFKNTTRNRYIKIDITRIDCKLCPEKIDSLDDFKQHLMTVHRKPYFPQSKDGVIPFKLIQNVNICTLCGEEFQQFKGLVRHMDQHFSNYVCETCGMGFMDEKSLQKHLPAHSGRRYPCDECGSSLKSEYTLQCHMRRSLPTHSGRRYPCDECGSSLKSEYTLQCHMRRSLTTHSGRRYPCDECGSSLKTEYTLQCHMRRIHGRNEAVSDLSDAEPGKEPESPKEPEPALPCQGCELTFKSRRYLAIHVRRVHMNYRQVCQVCGQKFFTRFALNNHMPTHTGERNYKCKECGKTYPRLKTLKEHMRIHTNDRRYRCHICGQAFIQNCSLKGHLKSKHPEYR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -