Arep020751.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- -
- Assembly
- GCA_949125135.1
- Location
- OX421244.1:4562863-4566263[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.1 84 4.6 3.7 3 23 52 72 50 72 0.96 2 16 0.56 45 5.4 0.5 2 15 100 113 99 122 0.86 3 16 0.22 17 6.7 0.9 1 23 142 165 142 165 0.97 4 16 4.6e-05 0.0037 18.3 2.1 1 23 170 193 170 193 0.96 5 16 2e-05 0.0016 19.5 1.5 1 23 197 220 197 220 0.94 6 16 0.0095 0.75 11.0 0.6 2 23 223 245 222 245 0.95 7 16 3.4 2.7e+02 3.0 0.8 2 19 252 269 252 271 0.91 8 16 0.001 0.079 14.1 3.2 1 20 371 390 371 394 0.91 9 16 0.98 78 4.7 0.9 3 23 425 446 423 446 0.94 10 16 0.12 9.3 7.6 0.1 1 21 467 487 467 490 0.75 11 16 0.43 34 5.8 0.3 3 21 498 516 497 517 0.92 12 16 1.9e-06 0.00015 22.6 0.6 1 23 525 548 525 548 0.95 13 16 0.056 4.5 8.6 1.5 1 23 553 576 553 576 0.95 14 16 0.0012 0.099 13.8 4.8 1 23 580 603 580 603 0.97 15 16 0.00039 0.031 15.4 1.1 2 23 610 631 610 631 0.95 16 16 3.6e-05 0.0029 18.6 2.2 1 23 637 659 637 659 0.98
Sequence Information
- Coding Sequence
- ATGATGGCTGAAGAAAAAttgaacctctcgtatctcggaaacgATCTAAACTTCAAACGGATAGTGTTACCGATAGAACAAAGGCGACGGAACCTCGAGATTCTGTTCAACAACACCACAGTCATTCCATTTAAACATCGCGGACAGTGCTTGTGCTTTTTCTGCGGTTTAAAAATGAAAGATCGACAGCAGCTGTTTGAGCATACTCAGACTCACCTACCGTGCAATACCAGGCATAGCTCGATAAAGGGTTTGAATTTGACAGACTTTGAGATCAAAGTTGACGTGTCAGAAATACAATGTAAAGTTTGCTCTGAAAGGTTCAGCAATATTTACAACGTAGGTTTCCATTTGACTCACAAGCACAATCTACCGTATAACCTGACCACAGTGATCGGTGCAGTCTCCTACAGGCTGATCGACTTCAAATGTGTAGCATGTTTTAAACAGTTGAAAACATTAAGAGGTCTTATTCAACATACGAACAAGGAACATCCCGTTCATTACTTCGAATGCGAACAATGTGCCAAAAGATTTAGAAGGAAGCATGACTTGTTGGTTCACATAAATCAGACGCACAACGAAGAGTACAGATGTCCCAAATGCCCTGAGACTTTCAAGTCGAAAAAGGAGTATATAAAGCACAAGAACGACGATCATATCTCCCAATGCAACTTGTGTTTCCAAACGTTTCCGTCGTCCGCGATGCGACTAAAGCATATGAAGGGTGAGCACGACATAGCTCTCGGCGGCACATGTGGATTTTGCCACAAGAAATTAAACTCACGGTTCGCTTTTCTCGATCACGCCGGTAAATGCACAGTCGGAGGACCTGTAAACATCGAAGTGTCTTTGACACCTGTCAAGACAGACGTAGATATGAAAGGCTCATTTTCCTTGACCAGTTTTATCAAGACAGACTCAGATATGGCAAGTCCAATGTGTTTTACAACTTCGATCAAGATAGACAAAGATATGACTCCTCCAATCGAGGCTGAGACGGTAACAGCTATGGCTGCAATGCGTAGGGCTAAAAGAAGTGCCAGGAATAGTATTGCATATGTATTCAACAACACCACCGTCGTACCTTTCAAACGTTACCACAATAGGTTCAGGTGTTTCTACTGTCCGAAAGAGTTTAACAGCTGCAACGATCTCAGGCGTCATTCCGTGGAAGAGCATCCAATTTGTGATGTCAAACtgaaatgtatgaaattgaGCGGCTTAGGATATCAGTATATGGGAATCAAGGTCGACTCCTCAATATTGGCATGCAAGTTGTGTCTCTGCCACTACGAGGACTTGAAAGCGTTGCTAGCTCACTTAGAATCCGAACATGGGGCAAAACTTGGCGACTGCATCAACAAATTGATACCATTTAAACTGATAGATGACCAGTACCCGTGTCCGCAGTGCGGGGAAGAATTCGCGAGTTTTGGCGTCACACTGATTCACTTCAATAAAGAACATAACACGGAAAACAGGGTGCTATGCGTGACTTGCGGTGAATCATTCCACGGCGTGACCTCTcttcaaatacataaaaatcgCTGTAACGGCGCTCCTGAGCGGTTCAAATGCACCCGATGCGGCTTAGGGTTCTACAATAAGAGCCAACTAACTCGACATATGGGCATAGCACACAAAAAGAAAGTCTTCAAGTGTCCACTCTGCCCCGAGTATTTTGCATCGGAACACTTCAAAATGACGCACATCACCAAAGATCATAAAGGTGGCCACCGATGCACACATTGCGATGCTACCTTCATGTTTCGCTCGCGGTTGATCCAACACATTAGGAGATTGCATCTTCTAGAAAAGAACGAGAAGTGTCCGTACTGCGAGAAAATGTTCTTTGACCAGCGCAGGTTGAAAAACCACCTGGTTTTACATACTGGAGAAAGGGCCTTCAGCTGTGACTACTGTGACAAGACGTTCTCGTGGAAAAAAAACCTGATTAGCCACATACATGTGCATTTAAAGAACGCAGGTCTCGATAAAAAGAGGAAGGAAATTATAAAGCAATAA
- Protein Sequence
- MMAEEKLNLSYLGNDLNFKRIVLPIEQRRRNLEILFNNTTVIPFKHRGQCLCFFCGLKMKDRQQLFEHTQTHLPCNTRHSSIKGLNLTDFEIKVDVSEIQCKVCSERFSNIYNVGFHLTHKHNLPYNLTTVIGAVSYRLIDFKCVACFKQLKTLRGLIQHTNKEHPVHYFECEQCAKRFRRKHDLLVHINQTHNEEYRCPKCPETFKSKKEYIKHKNDDHISQCNLCFQTFPSSAMRLKHMKGEHDIALGGTCGFCHKKLNSRFAFLDHAGKCTVGGPVNIEVSLTPVKTDVDMKGSFSLTSFIKTDSDMASPMCFTTSIKIDKDMTPPIEAETVTAMAAMRRAKRSARNSIAYVFNNTTVVPFKRYHNRFRCFYCPKEFNSCNDLRRHSVEEHPICDVKLKCMKLSGLGYQYMGIKVDSSILACKLCLCHYEDLKALLAHLESEHGAKLGDCINKLIPFKLIDDQYPCPQCGEEFASFGVTLIHFNKEHNTENRVLCVTCGESFHGVTSLQIHKNRCNGAPERFKCTRCGLGFYNKSQLTRHMGIAHKKKVFKCPLCPEYFASEHFKMTHITKDHKGGHRCTHCDATFMFRSRLIQHIRRLHLLEKNEKCPYCEKMFFDQRRLKNHLVLHTGERAFSCDYCDKTFSWKKNLISHIHVHLKNAGLDKKRKEIIKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -