Basic Information

Insect: Alcis repandata
Gene Symbol: ZNF280A
Assembly: GCA_949125135.1
Location: OX421244.1:4198257-4204873[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.066 5.3 8.4 0.3 2 23 227 249 226 249 0.91

2 10 7.2e-05 0.0057 17.7 0.4 2 23 274 296 273 296 0.96

3 10 0.027 2.2 9.6 0.6 2 23 320 341 319 341 0.96

4 10 6.1e-06 0.00049 21.1 2.0 1 23 345 367 345 367 0.98

5 10 0.24 19 6.6 1.7 1 13 372 384 372 385 0.91

6 10 3.6e-05 0.0028 18.7 2.2 3 23 405 426 403 426 0.96

7 10 4.2e-07 3.3e-05 24.7 1.4 1 23 433 456 433 456 0.98

8 10 0.0056 0.44 11.7 0.6 1 23 462 484 462 484 0.96

9 10 1.1e-06 8.8e-05 23.4 3.3 1 23 490 512 490 512 0.99

10 10 7.3e-05 0.0058 17.7 1.4 1 23 518 541 518 541 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.066	5.3	8.4	0.3	2	23	227	249	226	249	0.91
2	10	7.2e-05	0.0057	17.7	0.4	2	23	274	296	273	296	0.96
3	10	0.027	2.2	9.6	0.6	2	23	320	341	319	341	0.96
4	10	6.1e-06	0.00049	21.1	2.0	1	23	345	367	345	367	0.98
5	10	0.24	19	6.6	1.7	1	13	372	384	372	385	0.91
6	10	3.6e-05	0.0028	18.7	2.2	3	23	405	426	403	426	0.96
7	10	4.2e-07	3.3e-05	24.7	1.4	1	23	433	456	433	456	0.98
8	10	0.0056	0.44	11.7	0.6	1	23	462	484	462	484	0.96
9	10	1.1e-06	8.8e-05	23.4	3.3	1	23	490	512	490	512	0.99
10	10	7.3e-05	0.0058	17.7	1.4	1	23	518	541	518	541	0.97

Sequence Information

Coding Sequence: ATGTCCTCGCTTCAGCTATGTCGTTGCTGCATGACGCGGCCTCCCGATAAGAACTTAAAAACACAATACACCAGACTAGGAGTTTCTGAAGTTTACGCCGATATGCTGAAAGAATGCTTTGAAATACACCTAGCAACAGGCAGTGAGAGCTCAGCGGGTATCTGCGAAGTCTGTGTCACTCGGTTATGCGACGCGGCCGACTTCAAGAAGCAGGTGCAGCACTGCCAGAAGGCCTGCCATGCGCTACTTACACCAGGGGTTAAAGATGAAGCAGCCCCTAAGGTGAAAGAAGAAATTTCAGACTACGATGACAATGGCATATTTTTTCTTGATTTAAAAGAAGAGCTATCCTCATACGAAGAGCTTCCCGAAGACGATGACGATAAGAAACTCGCTGAGTTGTTAGGGCTTCGCCACCTCGGAGCCACCACCGTGAGGCGGAAGACGGGGCGGAAGAAGGATAAACTGGCAAGAAGTGAGAAAAAACTAAAGAAGAGATCATCCGAGCCCCTCAAGATATCGTTCGCGGCGCTTTCcaaactcgacaaaatctacCCTCTGAAGCAAAGCAGCCGCGTGCCTTACCGAAGCGACGCGATCAAACACAAAACTAACATGGACAATATCATGAAAAACTCAAACTGCGCGCCATTTGCCAACAAAACTCTCGCTGGCATCACTTGTGCCTTCTGCAAGCAAATTTACCAAAACCCACAAGAATTACGAACTCACTTGGAAGATAAACACCAAAATGATAGCATTCTAGACCCAACTAAAGACAAAAGCAACCTATCTTACAAACTGGATATATCAGACCTAAAATGCACGATTTGCTCGAAGAATTTCGACGTGATCTCCAATTTGAAGACGCATTTAGCTACAGAACACGATGTCAAGTTCTTTCCCGATGTTCATGACTATATTTTAGAGTTTAAACTAACGGATGCAGAAATGCTAAAATGCGCTCTATGTAATTCCACGTATGAAACGTTCAAAATGCTTCTACAACACATGAACGGGCACTACAGAAATTTCATTTGCGACGTCTGTGATCTAGGGTTCATAAACAAGCATAAACTGAAGAATCATCAGCGGACCCACGAAATAGGGAACTTCAAATGCTCGTTCTGTGACAAAGAGTTTCCGACGCGAGTCAGAAAGATGTGCCACGAGAAATATACACACAACACCTCAGCGAGATATACAACAAACTGCCCGCAATGCAACAAATCTTTTACCAGCTACTATCAAAGGAATAGACACATGTTCACCGAACACAACACCGTTGCAGCCACCTACAAATGCAACATCTGTGATAAATCATTCATATTAAAATCCAAACTCACTTCCCACATCAAGAAAGTACATCTAATGGAACGGAATCACATCTGCACGGTATGCGGTCAAGGGTTCTTCATAAAACAGTCTTTGGATGAACACATGATCAAGCACAACGGTGAAAGGGTTTTCAAATGCACGGTCTGTCACAAAGCATATGCGAGGAAAAAGACTTTGAGAGAGCATATGCGGATTCACAATAACGATAGGCGGTTTAAGTGTGGAGTGTGTGGTTTGGCGTTCGTTCAAAAGTGTAGCATGAAGAGTCATATGCTAAGTAATCATGGTATAACGCTGGCTGAGTACGAAACGACGCACACTGATGAAAGGTCCGAAACTAGGATACAGGTAGAATGTGAAAGGTTAGAATAA
Protein Sequence: MSSLQLCRCCMTRPPDKNLKTQYTRLGVSEVYADMLKECFEIHLATGSESSAGICEVCVTRLCDAADFKKQVQHCQKACHALLTPGVKDEAAPKVKEEISDYDDNGIFFLDLKEELSSYEELPEDDDDKKLAELLGLRHLGATTVRRKTGRKKDKLARSEKKLKKRSSEPLKISFAALSKLDKIYPLKQSSRVPYRSDAIKHKTNMDNIMKNSNCAPFANKTLAGITCAFCKQIYQNPQELRTHLEDKHQNDSILDPTKDKSNLSYKLDISDLKCTICSKNFDVISNLKTHLATEHDVKFFPDVHDYILEFKLTDAEMLKCALCNSTYETFKMLLQHMNGHYRNFICDVCDLGFINKHKLKNHQRTHEIGNFKCSFCDKEFPTRVRKMCHEKYTHNTSARYTTNCPQCNKSFTSYYQRNRHMFTEHNTVAATYKCNICDKSFILKSKLTSHIKKVHLMERNHICTVCGQGFFIKQSLDEHMIKHNGERVFKCTVCHKAYARKKTLREHMRIHNNDRRFKCGVCGLAFVQKCSMKSHMLSNHGITLAEYETTHTDERSETRIQVECERLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00935982;
90% Identity: iTF_00033225;
80% Identity: -