Arep020754.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- -
- Assembly
- GCA_949125135.1
- Location
- OX421244.1:4581000-4584020[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.44 35 5.8 0.4 1 23 111 133 111 133 0.94 2 18 0.035 2.8 9.2 0.1 2 23 158 180 157 180 0.93 3 18 0.83 66 4.9 0.1 2 23 203 225 202 225 0.92 4 18 0.024 1.9 9.8 5.2 1 23 231 253 231 253 0.91 5 18 0.00032 0.026 15.6 0.2 3 23 260 280 258 280 0.95 6 18 0.0029 0.23 12.6 1.5 2 23 285 307 284 307 0.97 7 18 0.00015 0.012 16.7 2.8 2 23 314 336 313 336 0.96 8 18 0.018 1.4 10.1 1.6 3 23 344 364 343 364 0.96 9 18 0.063 5 8.4 3.6 2 23 371 393 370 393 0.94 10 18 0.00031 0.024 15.7 1.6 1 23 466 488 466 488 0.98 11 18 0.35 28 6.1 0.4 2 23 517 539 517 539 0.91 12 18 0.19 15 6.9 2.2 2 23 562 584 561 584 0.95 13 18 5.2 4.1e+02 2.4 0.1 2 23 589 610 588 610 0.76 14 18 0.027 2.2 9.6 0.6 2 23 614 636 613 636 0.93 15 18 0.004 0.32 12.2 0.5 2 23 642 664 641 664 0.94 16 18 0.0058 0.46 11.7 1.0 3 23 673 694 671 694 0.95 17 18 0.0071 0.56 11.4 0.6 2 23 701 722 700 722 0.94 18 18 0.00014 0.012 16.7 0.2 1 22 728 749 728 752 0.90
Sequence Information
- Coding Sequence
- ATGCAACCTCTACGAAGTCGTCGCACCATCTTCTCCGAGGTCGTTCTTTGTTCCGAGGATCCGAGTTTACTGCTGGCAATAGCTGTGCAAAATCATGAGTTGCAAGAGTCTGCTAATGCTATTACGATAGCCAGTGATGAAACTGACAAATTAAGAAGACCCCTTTTCATTCCAGGATCTAAAACCAGTACACAAGACTCGCTGACCGCGAGCTCAGAATCCGAAGACGAACCTCAGGTGATTGACCAAAGACTGCTGGCAATGAGGGCAAATATCACCAAAGTGGTGCTCGGCTCAACTGCCATGCCTTTCCGGTGGCTAACTACTTCCTACAGATGCTTTTACTGCTATGATATGTTTGAAACCGTGCCAGAATTGAAGGCCCACAATCTTTTACACGAAAGAAACGAAATCACGAGGGTAATGCAGAAGTACTGGGAAAATGATGTTTTTGTAGACATATCAAAACTTTCCTGCACAGAATGTTTGGAAGACTTCAAAAGTTTAAATGAACTTATTGATCATTTGGTGAAAGAGCATGGCATTGAGTATGACGATGACacgaaattttgttttaaacctTTCATTTTGAAAGAGAACGAAGTTGTTTGCGGGATTTGCGAGTCAAGCTTCAAATTATTCAATCAGCTCTTACTTCACGCAACCAAAGAACATAGAAACCCTGAAGACTATATTTGTGACTACTGCGGAAGATCATTCAAGAAGCATCAATACAAGATGCATGTACACAACGAACATAGAAGCAGGACTGTCAACTGCACGCAGTGCGGTGAAGTCTTCAGTTCTTACGCTTTGAGGACCCACATGATCAAAGTCCACGGCCGCAAAGTGAAATGCAAAATGTGCAGTGAGACTTTTCCAACTTACTACAAGAAACAGCAGCACATGACGACTGTCCACCGAACTCGGAGCGAGATCAAATGCCCACACTGCGTCAAAACATTCTACTTCCAAAGCTCGATGCTTCGACACTTAAGGCAAATGCACTTGAAGGAGAAAAACGCAATTTGCAATATATGCGGATGGACGACGTTCTGTCAAAGCCAATTGAAAGACCACATGGTAAAACACAAAGAAACAAGAGATGTTTCGTGCAAATTCTGCAATAAGTTATTCAAAGCCAAGAAGTATTTGAAGCTACATTATCATATATCGCATCCAGAAGAGTTAGAAAAGGAGAATGGAGTAGAACCTGATGAAGATTTGGGAGTACAGAGTGAAATAGAGGACGACGAAGAATCGGGAGATAATGATAGAATAGAATTTCTGTACTGGGATGATGATGAAACGAAGAAAGAGCACGCGTTAGCTGTATTGCTAAACGTCATCTTAGATCAGTCCACTATCGCCCCGTTTCGTTGGCACCAGTCTAAGTACAAATGTTTCTACTGCCCTTCTACCTTCTACCGTAGCGAAGCACTGAAAGAACACAGAACGATCCACGGCCAAGACGCAGTGGACCCAAAAGAAATCCACGACGCAGTCAGATACAGAAACGCTAAAATCAAACTCGACGTTTCAGATGCCACTTGCTTGAAATGCGGCAAAAGCGTGCAAGATTTCACCGGCTTTCTTCAACATCTATCAGAAGAACACGAATTGATTTTCGATCAACAGATCAAAAGATTGTTCAACTCCTTTAAGCTGTCAGACGAAGGCATGTCGTGTCTCGACTGCGGCCAGCGGTTTGATTTCTTCACGCCACTCCTGCAGCACTACAATAAGTGCCACATAGACCAGATCATGTGTGAAATATGCGGTGAAACTATACCGGAAACAAACGTATACAATCACATGTCGCAAAATCATGCAGCTATTTCTTGCAAGTTCTGCCTCAGCGCTTTTCGGACGAAATACGCGTTGTACCAGCATATAAGCCAAGAGCATAAGACAAACGATTTGAAATGTCCAACATGCAAGAAAATACTGGCAAACAAATATTTGAAGAAACGCCACATGGCGTTAGTCCACAATAACCAGAGTCTCCAAATAATTTGCGAGTTTTGCTCCAAAATCTTTACGCGGAACAATAAATATGTGGAGCATAAGAAGAGAGTGCATTTGAAGGAGAAGAATTGTGCGTGCGAGATATGTGGGTTCGAGACGTTTAATGCGGAGTTGCTGAAGTCTCATATGGTGAAGCATGAAATTGTTCGTCCGTTTGAGTGTGATGTGTGCGGGAAGTCGTTTCTTAGGAAAAGAAATCTCGTGGTCCATTTGGCGTCGGCTAAACACCCGCGCTGTAGCAGACATCACAACGTACCGATACCAAACTGCTGA
- Protein Sequence
- MQPLRSRRTIFSEVVLCSEDPSLLLAIAVQNHELQESANAITIASDETDKLRRPLFIPGSKTSTQDSLTASSESEDEPQVIDQRLLAMRANITKVVLGSTAMPFRWLTTSYRCFYCYDMFETVPELKAHNLLHERNEITRVMQKYWENDVFVDISKLSCTECLEDFKSLNELIDHLVKEHGIEYDDDTKFCFKPFILKENEVVCGICESSFKLFNQLLLHATKEHRNPEDYICDYCGRSFKKHQYKMHVHNEHRSRTVNCTQCGEVFSSYALRTHMIKVHGRKVKCKMCSETFPTYYKKQQHMTTVHRTRSEIKCPHCVKTFYFQSSMLRHLRQMHLKEKNAICNICGWTTFCQSQLKDHMVKHKETRDVSCKFCNKLFKAKKYLKLHYHISHPEELEKENGVEPDEDLGVQSEIEDDEESGDNDRIEFLYWDDDETKKEHALAVLLNVILDQSTIAPFRWHQSKYKCFYCPSTFYRSEALKEHRTIHGQDAVDPKEIHDAVRYRNAKIKLDVSDATCLKCGKSVQDFTGFLQHLSEEHELIFDQQIKRLFNSFKLSDEGMSCLDCGQRFDFFTPLLQHYNKCHIDQIMCEICGETIPETNVYNHMSQNHAAISCKFCLSAFRTKYALYQHISQEHKTNDLKCPTCKKILANKYLKKRHMALVHNNQSLQIICEFCSKIFTRNNKYVEHKKRVHLKEKNCACEICGFETFNAELLKSHMVKHEIVRPFECDVCGKSFLRKRNLVVHLASAKHPRCSRHHNVPIPNC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -