Arep023045.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Alcis repandata
Gene Symbol
-
Assembly
GCA_949125135.1
Location
OX421248.1:914182-933217[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.023 1.9 9.8 0.2 1 23 472 494 472 494 0.94
2 10 9.8e-07 7.8e-05 23.6 3.0 1 23 525 547 525 547 0.96
3 10 0.00057 0.046 14.9 2.2 1 23 554 576 554 576 0.99
4 10 0.00029 0.023 15.8 0.6 1 23 582 604 582 604 0.93
5 10 9.9e-05 0.0079 17.2 1.3 1 23 610 632 610 632 0.96
6 10 1.3e-05 0.001 20.0 0.7 1 23 638 661 638 661 0.96
7 10 0.0015 0.12 13.5 3.4 1 23 667 690 667 690 0.94
8 10 0.00067 0.054 14.6 2.0 2 23 697 718 696 718 0.97
9 10 2.1e-05 0.0017 19.4 2.5 1 23 724 746 724 746 0.98
10 10 0.0013 0.1 13.8 0.1 1 21 752 772 752 776 0.91

Sequence Information

Coding Sequence
ATGAATGGCGTTTGTCTGGTGTGCTCCACACAGCTAACGCCTGTTAAAACCCAAATAACAAATGTATTTTCACACAGCGCATTTTCTCGGAACTATTTAGCCAGCAGTACTACACTTCTAGACACCATCCAAGAAATACTCGACAAGAAACTGGATGAAAACAAAGTCCATTCCAAGGGTTTATGCAAAAAATGCTACATAAACTGTACCAACTATGATGAGCACAAGTCCAAGCtgaacataataaaaattgagATGTCTGAAGTGTTCAATACAACAACTGGAATTCACACCACTGGACGGACAATGCCTACAATACAGATAGTTAAAGAGGAAAAAACGATGGGAACCATAGTTGTGCCAGCATCGAAGCTGGTGCCAGTTCCGGCTGATTTCCAGCTCAATTTTAGTCAGCTCACCGGGTTTGGGCAGGCGATGTCCAAAGCAAACATTATTAGCAAACCCAAGGTCCCATCCATCAACCTGAAAGTCACCATCGGTACCTCAGTACTAACTCAGAGCGTTAACACGTCAACTGTCAAAATCGCCATGCCAGTGGACACCACAGACTCGAGCATCCTGTCAACTGTCAACAGTGACATAACGAAGAAATGGGACGTCAACTTTGTTCCGCAAGATATATTTTCTACTACCGAAGATGCTAGTCagaatgatgacgatgaaaacgGTGTTGATGTTGAAAAGGGTGACGAGGAAAATGAAGAGGGTAATGGAGAGATTGGTGATGAAGATAATGAAATGGAGATTGATGAAGATTGCAGCATGGCCATGGTGCCAGTCACCAGCGACGGTCAGGATCTGTTTCAGAACGTAAAGCAAGAGGAGTTATCCGAATTTACGGAGTATATAACGATAACAGAGAGCGCGGACAAAGCCGACGGAAACTATGTGTTTGGGAAACTCAAGATATACAACTCGCAGAACGGGGACGACGAACAACatACAATAATGGTAGATGGCGAAAACACATCGGTTTTGGAAATGATGACAGGACAAAAGTTGATCTACAAGAACGGGGGGCTTTCACTCGTGATGGCGGACGatgatgcggtcgaagatggtgTCAACGACGATGACGAAGGACAAGATTCTAACGACGAGTCTCAGATAGAGCTCCAAGTTTCGGGCGACGAGGAAACTGCCAACGCGATAATAGCGGCCGCACAGGAACAAGGTGGTGCCTTCATAAAGGTGGAATCAGGCGAGATGTACCGAGTGAAGTCCGTGCAGAGCGCCCCGGAGTCCAGCTACGATGTGGAGAGTCTGGTCAGCAAGCGGGGGGAGCTGTTCCGGTGCAACCTGTGCAGGCAGCGGGGGGAGGATGATGACGAGAAGCTATTAGAAGCAAACGCCATGATGCAGCATCTCAAGTCTGCGCACGACGCCAAGATATATCTGTGCCAGTTCTGTGGACAGGCCATCCGGAAGCGGAGCGAGTATACTGCGCATTTAGCGGAGCACCGGCGCTCCTCCcccggcgcccgcgcccgcctgCCCCCGCCACGCGCCTCCCACGCGCGTGACTCGCCCAGCGGCCCGGCGGCGCGTGCGCACGCGTGCCCCACGTGCCACAAGGCTTTTGCGAGCAAGTATACACTGCAGGCGCATATGAAGACGCATCAGATCCGTCCTCGGCCGTTCAAGTGCGAGCAGTGCAACAAGAGTTTCCTCTCCGTACAGAATCTGAGACAGCACGAGAAAACGCATTCCGGCATCAAAGATTTCATCTGTCAGTTTTGCAACAAGGCGTTCGGCACGCAGCACAACCTGGAGATCCACGGCGTGGTGCACACGGGCGCGCGGCCCTTCGCCTGCCAGTACTGCGACAAGGCCTTCGCGCGCCGCGCCGAGCTGCTCGACCACTGCAGGACGCACACCGGCGAGCGGCCCTTCCCGTGCGAGGTGTGCGGCGCGCGGTTCGCGCAGCGCTCCAACCTGCACTCGCACCGCCGCGCCACGCACCTGCACGACAAGCGCCACGCGTGCCACGCCTGCCCCAAGCGGTTCAAGCGGAGGAGGCTGCTGGAGTACCACATTAAGGCGACGCACACCGGCGAGCGGCCCCTGCAGTGCTCGATTTGCCGCTCAACCTTCGTGTATCCCGAGCACTATAAGAAGCACCTTAAGATACACTCGGGGCTGCGGCCCTTCTACTGCGAAATTTGCGGCAAGTCGTTCAACTCCCGCGACAACCGAAACACGCACCGCTTCACGCACAGCTCGAAGAAGCCGTACGAGTGCCTCGCGTGCGGCCGGTCTTACATGAGGAAACGGCTGCTCATCGCGCACATGAATGCCAGTGGACATTTGGCTGAATCGATAGTGGTGAATCAACCGCGAGTCACTAGGGTACATAAAACTGATGCTGGTCTCACAACTTTGGTTGAGATCGACGACCCGCCAGAAGTGCTGGATAACGATGAAAAGATTGAATCTgttttccgTACGGCAGGCAAGTTGGAGTCCCTCGACAAGACTGCGGTCGTCACCAAGATTTTGTCGGAAGAGGATAAGATATTCGTCGACTGCGATGAAATAGACCCCGAGAACGATGCGAGCGCGCTGATAGAAGCAGTCAACTCGGCGCAGACGCAGGACGACACCGCGCATTACGGAACGGATGAAAACGGAGCTATCTTAAGATTGATACAAGTGAAACTGCCGAATGGAAACGACGGCTGGGTCGCGCTCAACGACTGA
Protein Sequence
MNGVCLVCSTQLTPVKTQITNVFSHSAFSRNYLASSTTLLDTIQEILDKKLDENKVHSKGLCKKCYINCTNYDEHKSKLNIIKIEMSEVFNTTTGIHTTGRTMPTIQIVKEEKTMGTIVVPASKLVPVPADFQLNFSQLTGFGQAMSKANIISKPKVPSINLKVTIGTSVLTQSVNTSTVKIAMPVDTTDSSILSTVNSDITKKWDVNFVPQDIFSTTEDASQNDDDENGVDVEKGDEENEEGNGEIGDEDNEMEIDEDCSMAMVPVTSDGQDLFQNVKQEELSEFTEYITITESADKADGNYVFGKLKIYNSQNGDDEQHTIMVDGENTSVLEMMTGQKLIYKNGGLSLVMADDDAVEDGVNDDDEGQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVQSAPESSYDVESLVSKRGELFRCNLCRQRGEDDDEKLLEANAMMQHLKSAHDAKIYLCQFCGQAIRKRSEYTAHLAEHRRSSPGARARLPPPRASHARDSPSGPAARAHACPTCHKAFASKYTLQAHMKTHQIRPRPFKCEQCNKSFLSVQNLRQHEKTHSGIKDFICQFCNKAFGTQHNLEIHGVVHTGARPFACQYCDKAFARRAELLDHCRTHTGERPFPCEVCGARFAQRSNLHSHRRATHLHDKRHACHACPKRFKRRRLLEYHIKATHTGERPLQCSICRSTFVYPEHYKKHLKIHSGLRPFYCEICGKSFNSRDNRNTHRFTHSSKKPYECLACGRSYMRKRLLIAHMNASGHLAESIVVNQPRVTRVHKTDAGLTTLVEIDDPPEVLDNDEKIESVFRTAGKLESLDKTAVVTKILSEEDKIFVDCDEIDPENDASALIEAVNSAQTQDDTAHYGTDENGAILRLIQVKLPNGNDGWVALND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-