Basic Information

Insect: Alcis repandata
Gene Symbol: -
Assembly: GCA_949125135.1
Location: OX421223.1:7604715-7614945[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 3e-05 0.0024 18.9 0.5 1 23 206 229 206 229 0.96

2 11 0.084 6.7 8.0 5.5 1 19 292 310 292 315 0.90

3 11 1.7 1.4e+02 3.9 0.4 6 23 325 342 323 342 0.96

4 11 0.0067 0.53 11.5 0.2 3 23 350 370 348 370 0.96

5 11 2.3e-06 0.00019 22.4 0.9 1 23 378 400 378 400 0.99

6 11 0.00081 0.065 14.4 1.5 1 23 409 432 409 432 0.97

7 11 0.004 0.32 12.2 0.1 1 23 438 460 438 460 0.97

8 11 2.1e-06 0.00017 22.5 3.0 1 23 466 488 466 488 0.97

9 11 0.00044 0.035 15.2 1.0 1 23 493 515 493 515 0.98

10 11 3.4e-06 0.00027 21.9 4.2 1 23 521 543 521 543 0.97

11 11 0.0009 0.071 14.2 2.1 2 23 550 572 549 572 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	3e-05	0.0024	18.9	0.5	1	23	206	229	206	229	0.96
2	11	0.084	6.7	8.0	5.5	1	19	292	310	292	315	0.90
3	11	1.7	1.4e+02	3.9	0.4	6	23	325	342	323	342	0.96
4	11	0.0067	0.53	11.5	0.2	3	23	350	370	348	370	0.96
5	11	2.3e-06	0.00019	22.4	0.9	1	23	378	400	378	400	0.99
6	11	0.00081	0.065	14.4	1.5	1	23	409	432	409	432	0.97
7	11	0.004	0.32	12.2	0.1	1	23	438	460	438	460	0.97
8	11	2.1e-06	0.00017	22.5	3.0	1	23	466	488	466	488	0.97
9	11	0.00044	0.035	15.2	1.0	1	23	493	515	493	515	0.98
10	11	3.4e-06	0.00027	21.9	4.2	1	23	521	543	521	543	0.97
11	11	0.0009	0.071	14.2	2.1	2	23	550	572	549	572	0.95

Sequence Information

Coding Sequence: ATGGCTATGAACTTACAAGAGTTGTGTAGATTATGTGCTGCAAAGGATGACTTTTCGAAGGATCTTTTAGATGAAAGTAATAAGAATGTATTGAAAATGATTCAAGATATCATTCAGATCTTTatatatgAAAATGATAACCTTCCTACAAAAATATGCTTAAACTGTGAAGACAAAATGGTGTCCTTTCAACTGTTTATATTGGAGTGCTACAAAGTTCAAGACACACTGCGCAAAATGTATGTGGACAACCTTTGCAACCTACAAATTAAGGTTGAGCAACAGCAGGCACTTGATATGGAAAACATTCAAAGTTCTGTCATCAAGTCCGAGGTAAAAGATGAAATGACAGCTGAGGATATTGTCACTGCACTGAAAAATGAAGGTACTTTGAGAGAGATTAGTTTATATGATGACGACAGCCACCACAATGATGACGACCACCATGATGACCAccaagatgatgatgatgatgacgaagatGATCTGGCCATTGCCACTCTTAAAcagataaaaacgaaaaaagtcAAGCAaagaattaaaagtaaaattgacccggaaaaacttaataatattttgaaaacatctaattttaaagtaaaagatCTGGTTAAatTTGAATGTGTGCTGTGTTCAGAAAGGTTTAAGAGTTGGTCTAATCTACGCCTGCACTATGCAAAAGATCATAAAAGCGAACCAGTTGTGATATGTCTCTGTggatatgaaataaaatctaaaagcaTTCTCTACAAACATGTTTCTGATCACAAAGTGGAGAGCAAAAAGATGAACAATATTGCTGATAGTGAAGATGATAAGCCAGGGCAAATCGACTCTAGATATTCCAAGTTAAATGTTAAAGATTTTGTTAGGTTTATATGTCGAGAATGTGAAAAGGAATGTTCAAGCTGGTACAGTCTGAGGAGCCACTGCCAATACAAGCACAGCACCCTCCCCACTGTGCAGTGCAGTTGCGGCATTACTCTCAAGTCTAAATCTGTCATGTACAAGCACATACAGGATCATAAAAGCCCTAATGTATTGGCGTGTGACAAATGTCCAAGAATAACAAAAACCATTGCGGCATTAAACAAGCATAAATTAAGACATGTTCCAAAGTCTGAAAGAAAATATACCTGCGAATCATGCGATAAGATATTCACTACGAGAGACGCTTTGAAATCTCACGAAAGATCTCATATTCCTATAGAAGATAGGAAAATATATCATTGTGAAGTTTGTAATCTCAAGTTCACGACGCGCTCCTCGGCCGCGTCACACAAGCGCGTGGTACACGACAAGATAAAGGGCTACGTGTGCGACCTGTGCGGGTACGCGTGCGGCACGGGCGGCGAGCTGCGCCAGCACCGCGCCATACACAGCGAGGACAAGCCCTTCGCTTGCCGGACCTGCTCTAAATCTTTCAAAACGTACTCGAACCTGAAGACGCACATGGACACGCACGAAGACACGTCGTACGAGTGCTACATCTGCCGGCGCGTGCTCAACTCGCGGCGCACGCTGCGCAAGCATCTACTGGTACACGAGGACAAGTGCCGGCACGTCTGCTCTTACTGCAATAAAGCTTTCAAGCGGCGCCAGACTCTCAAGGTCCACATGTACACGCACACAGGCGACAAGCCATTAACATGCAAGTGGTGCGAGGAACGGTTTGCGTACGCGTCGACACTTCGCTCGCACCGGCTGCGCTGTCACcccgacaagatggcggcgcAGGCGCACGCGACGCACTACCAGCCCTACGGAGAACACAACAACATGCAACAGACATTCATCAAGAACGACGGCGTGGCAGTAAGTGTCCCGGTAGCTAAGAACGAGGTTGAGGCCATGTAG
Protein Sequence: MAMNLQELCRLCAAKDDFSKDLLDESNKNVLKMIQDIIQIFIYENDNLPTKICLNCEDKMVSFQLFILECYKVQDTLRKMYVDNLCNLQIKVEQQQALDMENIQSSVIKSEVKDEMTAEDIVTALKNEGTLREISLYDDDSHHNDDDHHDDHQDDDDDDEDDLAIATLKQIKTKKVKQRIKSKIDPEKLNNILKTSNFKVKDLVKFECVLCSERFKSWSNLRLHYAKDHKSEPVVICLCGYEIKSKSILYKHVSDHKVESKKMNNIADSEDDKPGQIDSRYSKLNVKDFVRFICRECEKECSSWYSLRSHCQYKHSTLPTVQCSCGITLKSKSVMYKHIQDHKSPNVLACDKCPRITKTIAALNKHKLRHVPKSERKYTCESCDKIFTTRDALKSHERSHIPIEDRKIYHCEVCNLKFTTRSSAASHKRVVHDKIKGYVCDLCGYACGTGGELRQHRAIHSEDKPFACRTCSKSFKTYSNLKTHMDTHEDTSYECYICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCEERFAYASTLRSHRLRCHPDKMAAQAHATHYQPYGEHNNMQQTFIKNDGVAVSVPVAKNEVEAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00034073;
90% Identity: -
80% Identity: -