Arep010744.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- PZF1
- Assembly
- GCA_949125135.1
- Location
- OX421231.1:9806031-9809544[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0004 0.032 15.3 1.6 1 23 16 38 16 38 0.95 2 9 1e-05 0.00082 20.3 1.0 1 23 44 69 44 69 0.95 3 9 4e-06 0.00031 21.7 2.0 2 23 79 101 79 101 0.97 4 9 0.0021 0.16 13.1 4.9 1 23 107 129 107 129 0.97 5 9 0.0022 0.18 13.0 1.8 1 23 135 157 135 157 0.98 6 9 4.3e-05 0.0034 18.4 1.2 1 23 160 183 160 183 0.97 7 9 3.5e-06 0.00028 21.8 3.1 1 23 188 210 188 210 0.98 8 9 7.3e-05 0.0058 17.7 1.3 1 23 219 244 219 244 0.95 9 9 6.3e-05 0.005 17.9 0.6 2 23 250 271 249 271 0.96
Sequence Information
- Coding Sequence
- ATGAATAAAAACGCTGAAAAAGAGGCAAAATCGGATAATAAACGACATATTTGTCAAACATGTGGCTCTTCATTCAATAGACCATATAGATTAACGCAACATTTGTTACTACACCAAAATATAAAAATATTTCAGTGTGGCGAAGCAGGTTGTGACAAATCTTATACAAGCAAGAGTCATTTAGATCGACATCTTTATAGTGTGCACATAAAACCTGATTTTGGTGTTATAAACAGGTGTCCAGAATGTATGAAAACTTTTTCAAACCGACAAAACTTAAAGAggcatataaaaataaaacatgagtCGAAGACTGCATTTAAATGTGATGTATGCAGGACTGACTTTAGGAAGAAACACCTTTTGAGTTCTCATATGTATTACCATACACTTGTTAAACCTTTCAGCTGTGAACTATGTAGTAAAGAATTTATCACGCTGCTTGAGAAAAAGAAGCATATGAAATATCACAAAACTTACAGCTGTGAGCTTTGCAACATGGCATTTGACCAGTGGTCTAAATATCAGAAGCATAAAAAATCTGAACATGATGTCAAAGAGTATAATTGCAATGATTGCGGGAGAACGTTCAAACAGAGAGAACATATAGTGCGCCATGTCAAAAAACACCTGGCTCCACCGAAACCTGTAAAGTATGTTTGCTGGTACCAAGACTGCGAGAGAGTTTATTCAAGACACAGCAACTTAAAACAGCATGTTGAGATGAAACACCTACAGCTTTCTCTCATTTGTGAAATATGTGATATGAAGCTGTCATCTAAGacaacattaaaaaaacatctgaAAGTTCACTGCAAGCCAGACGATTTGTGTTCCAAACACATTTTAATCAGGAAACATCCGAAAACAAAGGAAACTGGCCGCAGAGACAGAAAGGACAAAGGGGCCTTTAGAAATTCCACTGCCCTTAAAATTGCTGGTCTCTTAGACCTTGAAAATGAGGTTGAAAACGAAATAATGCCTGATTCAAAAGAAGTTAAAGGTGAACTTAAAAAGCCAACagaatctgaaaaaaatatgtctAAAAGTGGAAAAGAAGAGGGAATAGACACTGTCCCCAACACCATAATTAACATCTCCCTTGAACACATAGATCAAATGGAAACTAGAAGTATGGCAACCAATGTTAATGTAGCGGAAGCAGTTATTTCAGAATCTTAA
- Protein Sequence
- MNKNAEKEAKSDNKRHICQTCGSSFNRPYRLTQHLLLHQNIKIFQCGEAGCDKSYTSKSHLDRHLYSVHIKPDFGVINRCPECMKTFSNRQNLKRHIKIKHESKTAFKCDVCRTDFRKKHLLSSHMYYHTLVKPFSCELCSKEFITLLEKKKHMKYHKTYSCELCNMAFDQWSKYQKHKKSEHDVKEYNCNDCGRTFKQREHIVRHVKKHLAPPKPVKYVCWYQDCERVYSRHSNLKQHVEMKHLQLSLICEICDMKLSSKTTLKKHLKVHCKPDDLCSKHILIRKHPKTKETGRRDRKDKGAFRNSTALKIAGLLDLENEVENEIMPDSKEVKGELKKPTESEKNMSKSGKEEGIDTVPNTIINISLEHIDQMETRSMATNVNVAEAVISES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -