Arep020665.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- -
- Assembly
- GCA_949125135.1
- Location
- OX421244.1:3989895-3999587[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.32 25 6.2 1.0 1 23 54 76 54 76 0.97 2 18 0.27 21 6.5 0.1 2 23 104 126 103 126 0.91 3 18 4e-05 0.0032 18.5 1.4 3 23 151 171 149 171 0.96 4 18 0.0016 0.13 13.4 0.2 2 23 175 196 174 196 0.97 5 18 0.002 0.16 13.1 7.6 1 23 201 223 201 224 0.96 6 18 0.12 9.7 7.5 7.6 1 23 235 258 235 258 0.97 7 18 0.0018 0.14 13.3 0.3 2 23 265 287 264 287 0.96 8 18 0.068 5.4 8.3 1.3 2 13 292 303 291 305 0.86 9 18 0.067 5.3 8.3 2.6 1 23 353 375 353 375 0.98 10 18 0.053 4.2 8.7 0.1 2 23 403 425 402 425 0.96 11 18 0.00033 0.026 15.6 0.9 3 23 450 470 449 470 0.97 12 18 0.0062 0.49 11.6 0.5 2 23 474 495 473 495 0.96 13 18 1.1 87 4.5 8.6 1 23 500 522 500 523 0.94 14 18 0.19 15 6.9 2.5 2 23 535 557 534 557 0.96 15 18 0.00049 0.039 15.1 0.4 1 23 563 586 563 586 0.98 16 18 7.2e-07 5.8e-05 24.0 0.5 2 23 591 612 590 612 0.96 17 18 9.3e-05 0.0074 17.3 1.8 1 23 618 640 618 640 0.98 18 18 0.0095 0.75 11.0 0.7 1 23 644 667 644 667 0.96
Sequence Information
- Coding Sequence
- ATGATCAATCTCAGAACTCTGGCGTCCCTACCTGCTCCCGCACACTGCGTAGATAGGCCAAAAACTAGTCCCTGGATTATTACAACATCGGAACGAGAAAACGCTGCCACGTTCTTACAATACACAACCGTCATCCCTTTCACGTTGTTCTATGGCAACTACAAATGCTTCTACTGCGCTGAAATATTCACAGAACTGCATCCAGCTCTTCAGCATGTGAAAACACACGCTGTTCCTACTCAATCCTCTCTGTTAGATAATTATATAAGGAAAGGTAGACGGGTCATACCAGTTGATGTCTCTGGACTGTCATGCAGGATCTGTGAGCTGAAATACTCAGAGCTGGACGATATCAGAAAGCATTTAATCGATGCTCATAAGAAAGGGTTCAACAAAGCTGGAAATGGTCTGGTGGCTTACAATCTCAGCACACCGAGCGGCCACCTCGCTTGCCACACGTGCGGCATGCAGTTCACCTCCTTCATCTCTTTAAACCGTCACATGAACGTCCACGAGAACTTAGTCTGCGAAACTTGCGGTTTAGGGTTTATGAGCCAACGGAGACTGAAGGGACATATGATCACCCACCAAGATGGGaattataaatgcaaacaaTGCCATAAAGTATTCTCCACGACGATAAAGCTGCGGTACCACACTGAcagacaccacaaaaaggagaACGAAAACAAGCAAAAGCGACACAAGTGTCCACATTGCTCGGAGCGGTTTTATGGGCACTACAGCAAAACGACGCACTTGAGAAGAGTTCACGGAATCACTGTCGAACTTGAGTGTCAAACTTGCAAGGCAGAGTTTCCAAATAAAATGGCCTTGACAGAACACACTAGAAAGGTTCACATACAAAATATAGTGTGCAAAATATGTGGGAAGTGTTTTGGGACTCCGAGAACCCCAGCGTCTCCGCAAGCCCCCGCACAAACGGACGAAGGGCCAAGAACTAGTGCATGGATTATCACAGCACCAGAACGAGAAAATGCGGCCACGTTCCTACAATACACAACCGTTATCCCTTTTACATCGCTTCAGGGCAGTTACAAATGCTTCTATTGCGAAGAAATATTTACAGAACTGCATTCAGCTCTGCAGCATTCGAAAACTCATACTGTTCCCAACCGATCTTCTCTATTGGATACGTACATCAAAAACGGCAAACGAGTCATCAAAGTGGATGCATCTGGGCTGAAATGCAGGATCTGTGAGCTGAAATACACAGAGCTGGACGATATCAGAACGCATTTGATCACCGCCCACAAGAAAGTTTTCAACAAAGGTGGAAGTGGCCTGATGGCTTACTATCTCAGCACACCGAGCGGCAACGTCGCTTGCTACAAATGCGGTTCGGAATTCACGTCCTTCTTCTCTTTAAACCGTCACATGAATGTTCACGACAACTTGGTCTGCGAAACTTGTGGTTTAGGGTTCGTCTCTCACCAGAGACTGCGGAGCCATAGGATCGTTCACCAGAACGGAAGCCACAAGTGCGAGCAATGCCAACAAATATTCTCTACCAAGATGAAGCTGCGCTGCCACACCATCAGACACCACGAACAAACAAACGAGAAGAAGCTAAAGCCAAACAAATGCCCACATTGTCTCGAAAGATTCCCCGAACACTACCAAAAGATGCTTCATATGAAAGAAGCTCACGGAATCACCTTCAAGTTCGAATGCCAAACTTGCAAGGCAGAGTTTCCGAACAAAATGGCCTTGACAGAACACACCAGAAAGGTCCACATACAAAATATAGTGTGCAAAATATGTGGGAAGTGTTTTGGGACTCCAGGTGCGTTGCGGAGACACACGAGAGGGCATACTGGCGAGAGGAACTTCGTCTGTGCAGTCTGTCAGAAGGCATACATGCATGAGAAGCAGCTTCGTATGCATATGAAGACTCATGGCTACAGGTTCACTTGCCTCAAATGTGGGAACGGGTTTATGGAGAAAGCTGATTTGAGTAAACACAAGAAGCAATGGCATGTGGACCTGGCGCGCTCTAAAAACTCCAATTTAGACTAA
- Protein Sequence
- MINLRTLASLPAPAHCVDRPKTSPWIITTSERENAATFLQYTTVIPFTLFYGNYKCFYCAEIFTELHPALQHVKTHAVPTQSSLLDNYIRKGRRVIPVDVSGLSCRICELKYSELDDIRKHLIDAHKKGFNKAGNGLVAYNLSTPSGHLACHTCGMQFTSFISLNRHMNVHENLVCETCGLGFMSQRRLKGHMITHQDGNYKCKQCHKVFSTTIKLRYHTDRHHKKENENKQKRHKCPHCSERFYGHYSKTTHLRRVHGITVELECQTCKAEFPNKMALTEHTRKVHIQNIVCKICGKCFGTPRTPASPQAPAQTDEGPRTSAWIITAPERENAATFLQYTTVIPFTSLQGSYKCFYCEEIFTELHSALQHSKTHTVPNRSSLLDTYIKNGKRVIKVDASGLKCRICELKYTELDDIRTHLITAHKKVFNKGGSGLMAYYLSTPSGNVACYKCGSEFTSFFSLNRHMNVHDNLVCETCGLGFVSHQRLRSHRIVHQNGSHKCEQCQQIFSTKMKLRCHTIRHHEQTNEKKLKPNKCPHCLERFPEHYQKMLHMKEAHGITFKFECQTCKAEFPNKMALTEHTRKVHIQNIVCKICGKCFGTPGALRRHTRGHTGERNFVCAVCQKAYMHEKQLRMHMKTHGYRFTCLKCGNGFMEKADLSKHKKQWHVDLARSKNSNLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -