Basic Information

Insect: Alcis repandata
Gene Symbol: salm
Assembly: GCA_949125135.1
Location: OX421235.1:330163-332956[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.043 3.4 9.0 2.3 2 23 187 208 186 208 0.97

2 13 0.0013 0.1 13.8 2.4 1 23 214 236 214 236 0.96

3 13 0.058 4.6 8.5 5.0 1 23 260 282 260 282 0.99

4 13 3.1e-06 0.00024 22.0 1.6 1 23 288 311 288 311 0.97

5 13 1.3e-05 0.001 20.1 3.0 1 23 320 342 320 342 0.98

6 13 1.3e-05 0.001 20.1 1.1 1 23 348 370 348 370 0.98

7 13 8.6e-06 0.00068 20.6 5.6 1 23 376 398 376 398 0.97

8 13 3.2e-06 0.00025 22.0 2.8 1 23 404 426 404 426 0.98

9 13 0.00054 0.043 14.9 0.4 2 23 433 455 432 455 0.94

10 13 2.4 1.9e+02 3.5 0.1 3 12 462 471 461 479 0.84

11 13 0.0018 0.14 13.3 5.6 1 23 485 508 485 508 0.93

12 13 0.049 3.9 8.8 0.1 1 23 514 539 514 539 0.95

13 13 2e-05 0.0016 19.4 1.1 1 23 545 568 545 568 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.043	3.4	9.0	2.3	2	23	187	208	186	208	0.97
2	13	0.0013	0.1	13.8	2.4	1	23	214	236	214	236	0.96
3	13	0.058	4.6	8.5	5.0	1	23	260	282	260	282	0.99
4	13	3.1e-06	0.00024	22.0	1.6	1	23	288	311	288	311	0.97
5	13	1.3e-05	0.001	20.1	3.0	1	23	320	342	320	342	0.98
6	13	1.3e-05	0.001	20.1	1.1	1	23	348	370	348	370	0.98
7	13	8.6e-06	0.00068	20.6	5.6	1	23	376	398	376	398	0.97
8	13	3.2e-06	0.00025	22.0	2.8	1	23	404	426	404	426	0.98
9	13	0.00054	0.043	14.9	0.4	2	23	433	455	432	455	0.94
10	13	2.4	1.9e+02	3.5	0.1	3	12	462	471	461	479	0.84
11	13	0.0018	0.14	13.3	5.6	1	23	485	508	485	508	0.93
12	13	0.049	3.9	8.8	0.1	1	23	514	539	514	539	0.95
13	13	2e-05	0.0016	19.4	1.1	1	23	545	568	545	568	0.98

Sequence Information

Coding Sequence: ATGGAATTTAAGATATGTCGCGTTTGCCTCGACCGGACCGCCACAATATCGGTGTTCGACAAGCAGGGCGACGTGCAGTACTGCGCGAAGATGATGAAGTGTGCGAAAGTAGTGATCTCGGAGACAGACGGATTGCCAGACTCGATTTGCGAAGGCTGCGCGTGCGAGCTTGCTGCGAGCTACGAGTTCGCGGAGCGCTGCGAGGCTTCGGACCGCGCGCTGCGGGCCCTGGACCAGCTgcacgccgccggcgccgccaccCCCGCCGCCACCCCTGGGACTTCGCCTCAAACGTTGCACTGTAGCCATTTCAAACTAGAAGTAGAAATTAAACCAGAAAATGATACTCCTGATGGTTCTGAGCTCCTCGAAACTGGTCTTGATGATTGTTTTGAAATTGACGATGCAAATGCTCATGATGTACAAGATGATGTAACTgatgtaaaaaagaaaaaatccaATAGACATGAAGTCAGTAAATATCACTGTAAGGATAGTAAGAAAGTTTTGCCTAAACACAAACGCAAAAGAAAGGTAAGGCTTAAGACGGGTCCAATTCAATGTGTGATCTGTGACAGAACACTCTCCTGCCACTCAGCCTACGAGCTACACATGAGGTCACACACCAAAGAGAGACCCTACACATGTGACATTTGCAAAAAATCTTATTCAACAAAACATATAATGAAAACCCACATACTGGGACATTATGGAATAAAGGAAAACAGAAAGCGTAAAAAACCTGATAAGAGATCCAATCGGCTCAAAAGGTCACCTTACCAATGCACAACTTGTGGGCAAATGACGGTGTGTCACTCGGCGATGGAGCATCATATGAGAATCCACACGGGAGAGAAGCCATTCACATGCGATCTGTGCGGGAAGAAGTACACGCTGAAAGGAACTTTGCAGCGGCACATGCAGTCTAGACACCCGGAGTCCCATCCCGGTGCTCAATTTATATGTGAACATTGCGGGAAAATTTTCCATAACAGAACCAACATCATCACTCACATGCGAGTCCACACCGGAGCCAAACCGTACCAGTGTCCATTTTGTCCAGAAAGGTTTAGGCAACTTTCATCTATGGTTCGCCATAAAAGACTTCACACTGGTGAAAAGCCTTTTAGTTGCAATATCTGTGGACGAACATTCCGTGATCACAGCTGTCTAAACAAACACAGGAGTGTGCACATtgcagaaaaaaaatacaactgtcACCTGTGCACGAAAAGTTTCAAAAGGAAAGAGGGTTTGAGGGTTCATATTATCCGACACAGCAAAGAGAAACCCTGGGTGTGTAGTTTTTGTGGTCTGCGGGTCACTTCGAAAGGCAACCTGAAGACTCACACAGAGAGGATGCATTCTGAAAGGTCGGGTTTGTGTACAGTGTGCAACAAACAGTTCCCGGACGTGGCGGCGCACGCGCGCGTCCACACCGGGGAGCGCCCGTTCTGCTGCAAGATTTGCGACCGCAGCTACGCCACTCTGCGGAGCCTCTCGCACCACATGAGCTTCAAACACAGGAACGCTGGGAAATACAAATGTGCCCTGGAAAACTGTATAAGGTCGTTCCCGACGGCATCCATGCTGGAGTACCACGTCCTGAAGGCTCACACGCAGAGCACCCCGTACGTGTGCTCGCACTGCGCGCGCGGCTTCATGCGGCCCTCCGACCTGTCGCGCCACCTCAAGATGAACCACAGCGACATGCACACCAAAGTCCAGTCGCACTACATCTGCGCCACCGACGGGAGCCCTTGA
Protein Sequence: MEFKICRVCLDRTATISVFDKQGDVQYCAKMMKCAKVVISETDGLPDSICEGCACELAASYEFAERCEASDRALRALDQLHAAGAATPAATPGTSPQTLHCSHFKLEVEIKPENDTPDGSELLETGLDDCFEIDDANAHDVQDDVTDVKKKKSNRHEVSKYHCKDSKKVLPKHKRKRKVRLKTGPIQCVICDRTLSCHSAYELHMRSHTKERPYTCDICKKSYSTKHIMKTHILGHYGIKENRKRKKPDKRSNRLKRSPYQCTTCGQMTVCHSAMEHHMRIHTGEKPFTCDLCGKKYTLKGTLQRHMQSRHPESHPGAQFICEHCGKIFHNRTNIITHMRVHTGAKPYQCPFCPERFRQLSSMVRHKRLHTGEKPFSCNICGRTFRDHSCLNKHRSVHIAEKKYNCHLCTKSFKRKEGLRVHIIRHSKEKPWVCSFCGLRVTSKGNLKTHTERMHSERSGLCTVCNKQFPDVAAHARVHTGERPFCCKICDRSYATLRSLSHHMSFKHRNAGKYKCALENCIRSFPTASMLEYHVLKAHTQSTPYVCSHCARGFMRPSDLSRHLKMNHSDMHTKVQSHYICATDGSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -