Arep020682.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- -
- Assembly
- GCA_949125135.1
- Location
- OX421244.1:4069701-4078491[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0017 0.13 13.4 0.2 2 23 30 52 29 52 0.96 2 20 0.63 50 5.3 0.1 2 23 78 100 77 100 0.95 3 20 2.5 2e+02 3.4 0.3 3 23 122 142 121 142 0.89 4 20 3.6e-05 0.0029 18.6 0.2 2 23 147 169 146 169 0.95 5 20 0.063 5 8.4 0.9 3 21 176 194 175 195 0.95 6 20 0.37 30 6.0 0.1 1 13 202 214 202 220 0.90 7 20 1.1 87 4.5 1.7 1 23 232 255 232 255 0.91 8 20 0.0095 0.75 11.0 2.2 1 23 260 282 260 282 0.95 9 20 0.13 11 7.4 0.0 2 23 316 338 315 338 0.94 10 20 0.12 9.9 7.5 0.9 5 23 365 383 362 383 0.93 11 20 1.8e-05 0.0014 19.6 1.5 1 23 387 410 387 410 0.95 12 20 0.11 8.5 7.7 4.2 3 21 447 465 445 469 0.90 13 20 0.016 1.2 10.3 0.6 5 23 497 515 494 515 0.92 14 20 1.2e-05 0.00098 20.1 2.2 1 23 519 542 519 542 0.90 15 20 0.071 5.6 8.3 0.5 3 20 549 566 549 568 0.95 16 20 0.00064 0.051 14.7 0.9 1 23 575 598 575 598 0.94 17 20 0.0023 0.18 13.0 0.1 1 22 604 625 604 627 0.89 18 20 0.0019 0.15 13.2 3.6 1 23 631 653 631 653 0.93 19 20 1.1e-05 0.00087 20.3 1.0 1 20 659 678 659 681 0.94 20 20 0.27 22 6.4 1.1 1 23 687 710 687 710 0.90
Sequence Information
- Coding Sequence
- ATGAATTGCCCGAATGCGAGGCGGAACGCCGAGATTATAGTGCGATATTCGACAGTATACCCCTTCAAAGTGCCCGAGTCGTGCATAGTCTGTGTGTACTGTGGGGAAAGTTACGAGGAACCTTGTACGTTTAGGGCGCATATGGACACTGAACACGAAAAGTTCTCGTCTAAGAACGCGTTCACAAGGTACTGCAGCGAGAGGTACATCAAAGCGGACTGCACCGACATACGCTGCCGCATTTGTTCGGAAACCTCAGAAACTTTGGAGGAGATAGCCATACATTTACAAATgcaacataacaaaaaaatagatcTCGACACTCAGCTAGGTATTCAACCTTTCAAGCCGGATAAACTGTTATGCGCAGTCTGCGATGCGAAGCAGTTCGACCTGCGGGAGCTGAGTCGGCATACGCAATCGCATTTCTCGAGGATCACGTGCGACGCCTGTGGGAAATCGTACTCCACTACGAGCGCCTTACAGGTTCACATAAAATACACGCACGTGATGAACGAACGAATGTGTAGAAAATGTAAATCTACCTTCAGTTCGGCCGAAGAACAAAAGAAACATCTTCGAGAGTCTACGAGATGTTGGTTGCATGTTTGCAACGTGTGCGGGCAAAGATTCATGTCCTGGCCTATAAAGCAGTTGCACCTCGTCGATGTTCACGGGGTTCCAAAACGGCAGCACATATGCCCGGCCTGCGGCGTAGAATTTGCAGACAGAAAGTCATGTCGCGCGCATTTTAAACTGACACATACGAGCGATGTCTTCATTTGTTCTTGTTGCGGTCTCAAATTTGAAACGAAAAAGACACTCGAAGAACACCAAGTCACTCATACGAAAGAGAAGTTGTTTCCTTGCACCGACAACCATTACAAGATCAAGGGTTCTGTCCAGCCTTATGGAGCAGCGATTAAAGTCGATATAACAGATCTTCGATGTCGCATTTGTTCTATTGCGTTCGATAACGTAGAAAACATCGCGGCACATCTTTATTCCGAGCATAGCGTATCTAATCTTAACATATCTCATGACTTAGGCGTTCAACCTTTTAAAATATACGAAGGTCGTAATATCTGCATATTATGCTCGGAAAAGTTCGTCACGTTACGAGCTCTGTGTAGACACGCTCAATCGCATTATATAAATTACACGTGTGGGACTTGTGGCAAGTCTTATTCGAATCGGAGATCACTCACAGATCATACTAAGTTCGCACATCTCAACTCTAAAGAACTATCCCCCAATGTCATCGCGCGGAATAACGCCGCTCTGTTAGTGCAGTATACGACGGCTTATCCGTTCCGACTGCCATCCGAAGACGTCTGTTGTACCATCTGCTGCAAGGAATTCAATGATCCACACGAGTTTAGGCAACATATGATGGATGACGACCATAAGTCGCCTCACAAGATATTGCGCTTACTGTTGCCCTCCCAAACAGCTACGCTCAAAGTCGATgaTATTAATACTTGCATATTTTGTCCGGAAAAGTTTGTCACTTTACGCGCTCTGAGCAGACACACTCAGACTCACTATTTGAAGCATACTTGCGAGACTTGTGGTAAATCTTACTCGAACTCAAGCTCGCTTAAAGTGCACACTACGTTTGCACATCTCGGTCCAAAGGCCTGGTgcaaaaaatgtaaaaccaTGTTCGATTCTTCGGAAGAGAAACAAAAGCATTTAGCAGTATCACTGAGCTGCTGGCTGTTCTCATGCCATATCTGTGGTGAGAAGTTCATGTCGCCCAGTCTTAAAGTTAAGCACTTGCAAGCATCACACAACACTTCAAGTCACTACACCTGCCCAGAATGTCCCGAAGTTTTCATAGACAAAGGCAAACGGCGAAGTCACTTCATCGCCGCACACAcgaataaatttaaatgttcATGCTGCGATAAGACGTTCTCGACTAACTCTAAGCTCGTCAACCATTCCGTCGTGCACTCGTCGGAAAAGAAATTCCAATGCAACGTCTGTTTGAAAGAGTTTAGCAGAAAGAATAATTTGAAGCAACATATGCCGATTCACATGGATGATAAACCGTTCAAGTGCATAGCTTGCAACAAGCAGTTTAATCAACGCGTCGTTTGGAAGACACACATGTCATCCTACCATCCTGAAGTGGACACGACGAAATCTTAA
- Protein Sequence
- MNCPNARRNAEIIVRYSTVYPFKVPESCIVCVYCGESYEEPCTFRAHMDTEHEKFSSKNAFTRYCSERYIKADCTDIRCRICSETSETLEEIAIHLQMQHNKKIDLDTQLGIQPFKPDKLLCAVCDAKQFDLRELSRHTQSHFSRITCDACGKSYSTTSALQVHIKYTHVMNERMCRKCKSTFSSAEEQKKHLRESTRCWLHVCNVCGQRFMSWPIKQLHLVDVHGVPKRQHICPACGVEFADRKSCRAHFKLTHTSDVFICSCCGLKFETKKTLEEHQVTHTKEKLFPCTDNHYKIKGSVQPYGAAIKVDITDLRCRICSIAFDNVENIAAHLYSEHSVSNLNISHDLGVQPFKIYEGRNICILCSEKFVTLRALCRHAQSHYINYTCGTCGKSYSNRRSLTDHTKFAHLNSKELSPNVIARNNAALLVQYTTAYPFRLPSEDVCCTICCKEFNDPHEFRQHMMDDDHKSPHKILRLLLPSQTATLKVDDINTCIFCPEKFVTLRALSRHTQTHYLKHTCETCGKSYSNSSSLKVHTTFAHLGPKAWCKKCKTMFDSSEEKQKHLAVSLSCWLFSCHICGEKFMSPSLKVKHLQASHNTSSHYTCPECPEVFIDKGKRRSHFIAAHTNKFKCSCCDKTFSTNSKLVNHSVVHSSEKKFQCNVCLKEFSRKNNLKQHMPIHMDDKPFKCIACNKQFNQRVVWKTHMSSYHPEVDTTKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -