Arep021460.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- PRDM13
- Assembly
- GCA_949125135.1
- Location
- OX421244.1:9724975-9732949[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.00019 0.015 16.4 2.2 2 21 158 177 157 178 0.93 2 25 0.16 12 7.2 0.6 1 23 211 234 211 234 0.97 3 25 0.002 0.16 13.1 1.9 2 21 240 259 239 260 0.92 4 25 6.2 4.9e+02 2.2 0.5 1 8 372 379 372 380 0.91 5 25 0.0048 0.39 11.9 2.2 1 23 424 446 424 446 0.96 6 25 0.00019 0.015 16.4 0.5 1 23 451 474 451 474 0.95 7 25 0.005 0.4 11.9 2.1 1 23 507 530 507 530 0.95 8 25 5.3e-05 0.0042 18.1 2.5 2 23 537 558 537 558 0.91 9 25 5.9e-06 0.00047 21.1 1.8 1 23 565 588 565 588 0.97 10 25 0.28 22 6.4 1.8 3 23 715 735 714 735 0.95 11 25 0.29 23 6.3 0.7 3 21 770 788 768 790 0.88 12 25 0.0012 0.095 13.8 0.1 1 23 825 848 825 848 0.93 13 25 0.00056 0.045 14.9 1.1 1 23 854 876 854 876 0.98 14 25 0.42 33 5.8 1.7 5 23 886 904 884 904 0.97 15 25 0.012 0.95 10.7 1.0 1 23 910 933 910 933 0.97 16 25 0.013 1 10.6 0.4 3 23 943 964 942 964 0.96 17 25 0.0012 0.094 13.9 1.1 2 21 1074 1093 1073 1094 0.94 18 25 0.19 15 7.0 1.5 2 23 1128 1150 1127 1150 0.94 19 25 6.3e-05 0.005 17.9 4.5 1 23 1155 1177 1155 1177 0.98 20 25 0.36 28 6.1 3.6 2 20 1181 1199 1181 1201 0.93 21 25 2.9e-06 0.00023 22.1 1.0 1 23 1227 1250 1227 1250 0.95 22 25 0.23 18 6.7 0.7 1 23 1256 1278 1256 1278 0.83 23 25 0.13 10 7.4 0.1 1 23 1284 1306 1284 1306 0.97 24 25 0.0092 0.73 11.1 0.7 1 23 1312 1335 1312 1335 0.94 25 25 3.6e-05 0.0029 18.6 0.4 2 23 1342 1364 1341 1364 0.96
Sequence Information
- Coding Sequence
- ATGAACCGGCAAGTGGATGTAAAAGCACTGGTGTCGCACATCATCAGGGGAGATGGCTTGGACAAATGCCGAATTTGCATGGGCGATACATCACAAGGGCAAGTGCATCTCGGAGATACCGTGATGATGGACGGAGACAAGCCTGTGACCCTGTCTGAGCTACTGGAATTGATCACAGGAGTTACGGTCGTGACAGAAGAAGCCCTGCCACCAGCGTTATGCTTAGAATGCTCCTCTTCGGCTATCCAGGCAGCAGACTTCCGCACAGCCGTCCAAAATACCAACCATCAATGGACGAACATGACACAGCTTTTGGAACACGTCCCTGATCACAAATACTCGGAAACAAGTGACAGAATCTGCTCTCTGCTATGTGACAATGATATCTACATATCTGATTCATGTACTAAGCCGCAGCAAGAAGAAGAAATATGCTTTTCTTTTAAAAGACTTGGAAAACAGGTCAATTGCTCGTGTCCAACTTGTGGGAAGTCTTTTTCGTATCCGTTGCATTTGTACAAGCACTTGAAAGAGTCTCTAGATTTAGTGCGAGCATGTCACTTTTGTGCTCAAATCATGGGCAGAGATGAGCTAGTCAAGCATTTGACTGACGCACATGAAGTGCAACCGTATATTTGCAAAACATGTCCCGCTTTGTTCCTAGATAGGCAACAATTTAAACAGCATATGCTTAAAGCACACTCTCCCGGAAGATGCACTTGTGGAGAGTGCGGACGTAGCTTCAAGACTCATGCAGCATACCATGCTCATCAATCGATCGAATGGACGCCCTGCTTGCCGCCCCGCGTCTGCCGAGCCTGCTCCACCTCCATCACCGACTTTATGCCCTTCTTCGTTCTGTGCCGCATATCGGCGCACAAATGGAAACAAACTGTCAACTACCTAAACACTGTAACAGTAGACAAACAGGCTACCACAGCGTACGTGTTGTTAGACGAAGAGCCGCAGACCTTAGCAGATAGAAGCACCACCAAAAACAAAACCCCCAAAGACGTCCTTAAGAACATAAGACTGCGTCTGAATTATATTCGAGCTTCGCGGAAAAGGTCGAGCGCAAACATGACTATATGCAAGCGGAAAGGTTCCCACAAGTTTTCGTGCCCGGACTGCAATAAAGGCGGCTTCGAAGTCCTGTACAAGTTCAACTTCCATTTGAACATCAACAAGAAGCATTGCTGTCCGCATTGCTACAAAATAATGAACGTTAACGATTTTGGGAAGCATCTCGCTACCCACAACCTGTCCAGTTTCGAGTGTGACGTCTGTAATTTGCATTTCGAAAAAGAAACAAGTTTGCAGAGACACAAGATCTATCACAACAGAGGGAAATTCATGTGTCCGGAATGCAAATACACATTCAAGTCGATGGACGGGCTGACCATTCACACAAACTACGTCCATACGACCATGCGCTGCGCCTGCGGCAAAATATTTCACGGCAAAGGATGCTACCACGTCCACAAAAGACGCATCTGCCCCAAAAAACGCACACAATCCTATATATGCGACTACTGCGCGAAACCATTCACTAAGAAATGCACTTTAGGGAAACACATCGAAAACTACCACACAGTAAAAAGTTGCGAACAGTGCGACCAATGTGGAAAAACGTTCAAAACCAAAGCGCATTTGAAAGAGCACAGCTATGCGCACGACAGAGTTCTGAATCGCTTCACTTGCGAGTACTGCGGTAAAATCTACAGCACGCCGAGAGGGTTTCGAAGGCATATGACCAGGAAACATTATCAGGTAGACGAGGAGACAGACCTGCCACCCGGCCTGTGCCGGGATTGCAAAGATGACATCATAACCGCTGTCTCCTTCAAGCAACTGTACCAGCAATCAGCTCGGTTCTGGGACGACGCTACCGATTACCTAACCAGCATTGACGAACCTTCCGTCGAAGTTAAAACTTCCATCATCTTCTACCCTGAAGATAAACCAGTGCACAATATCATTAAACCAGTGCCCACAACACAAAACGCCCTGGACATCCTGAacgaattaaaaacaacaaaactcaAAAAGAAACGCTTTACGTGCAGCTGCCCATATTGTGATAAAAAGTTTACTTGCATAGAAGCCAAGAATGAGCATTTTAAGTACACATGGCTGAGATTCTGTCACAAATGCGGTGCCTCCGTCAGCAAGAAGAAGTTAGCCAGACATTTGGTTACAACACATAACATAGCAGTATGGGACTGCAAACTTTGTCACGACATATTTCAAAGACATTGCGATGTTAAAAGACATTTTGAGAAGTATCACAGGCCTGATTTGCATTTGTGCGTGTTTTGCGGGACTGGTTTCGCCAGCGAAACCGGTCTCAGAGCCCACAGCTACTTCCACACGCTGTTCAACTGTCCCTGCGGCGCTATCTTCGAAAACGCTCGATGCTACAAGTACCATATTTCGAACTGCAAGCCAAAAAAGCATGAAATTGAACCGAACTTCGAATGTGATTACTGCGGAGTCGTATACGACAAGAAACCGTCCTTACGCGTCCACATCGTACAAAAACACCTAAACGTACTCCCATTCGTCTGTCAACTGTGCGGCAAGCGTGCGTCTACTATTGGCCATTTGAGATCTCACGAGAAAACTCACGAGAGCCAGCGGAAGCTCGTAGAATGTCATTGTGGGGCAAAATTTCGTACCGACCTAGGATATAAGCTGCATATGAGGAGCCACTCAGGTTATAAGCCTTATAAATGTGACCAATGCGATAATAGTTTCATATCAGCGTCTAGAAGACTCGACCACATAAAGAGAAGGCACAAGTCTTCGATAGAGATGCAGCATGGCTGCAATCAGTGCACCTCTAAATTCATAAGACCGTGGGAGCTTAAAAAGCATTATTTGAACGCTCACGGCTCAGTCATACTAGAAGAAGATTCTTGCCCAATCGGCGCATGCGTCGGTTGCGCAAGCGCAGCGCTTTCCGCTCAAGAATTCCGCATATTTGTTCGAAACTCTGAAAAACTCTGGTGCAAAGCCATCTTCAACTTGTCGAACCTCGAAAACGAACACGAAGAACGCGCCAAATCAATTTGCGCCTTCGTAACACCCAACGACTTAACAATTCTTACGACAAAAGACTATACCGGAGGCGAACCGAAAGAAATCGTCAACCGCTCCACGGCTACCGTGAAGAAAACCAAACGGAAAGCGAGGCGGCATCTCACGGGGCCTATGAGCACTTGTTCAGAATGTAGCAAAACTTTTACGAGTCCGTTCCTTTTGCACGAGCATTTGAAGAACAACGGACCCAAGACAGCGTGTGTGACGTGCGGGGATGTGGTCTTTAGAGGTCAAGGCATGTTGGAACATATGGCGTCAGCTCATAACCAGCGGTTAACCATGTGTCTCCAATGCCCTTGCTTgtttaaaaacgaaaaagaGCTGAGTCAGCATTTGAAAGAGGGACACAAATCAGGCGTTTTCACTTGCTCAGACTGCGGTCGGAGCTTCCAAAGAAAGTCTACCTTCGAGCATCATTCGCAAATGCATGTGGTTCGGACATGTCGTAGCTGCGACCGGCAGTTCACGAACAGAAGCTGCTACAGAGAGCACAGGACCCAATGCGAGCCCGACGCCAAACCAGACAAAAGTACCATGCCTAGAAATCGGCGATCGAACATTCGAGATCCGGCTGTTTTTATATGCGATTACTGCAATAAGAAATATTCAACGCGTTCTCAACTGAAAAACCATATACTGTGGATACATATGGATCATAGGCCACATATATGTCAGTGGTGTGGAAAGAGGTTTTTCACTTATGGGCGAATGGCGGAGCACTCGGTGGTCCACACGCGCGTGCGCAACTTCGAGTGCGATATTTGTGGCGCGAAATTGGTATCCAAAATGGCGGCCGTCTATCACAGACGGCGTCACACGGGCGAGAAACCATATAAGTGCGAAGATTGCGATGCTACCTTCATTTCCTCTTCGCGTAGACTTGAACACGCCAAGCGGAAACATAATAAAGGTACAAGAATTCAGTGTATGCTGTGTCCGAATAGTTTTGTGCGGAAAAGTGAGCTTAAAAAGCATAtggaaaaggctcataatactgtGGATGACGGGGAAAGGAATAATGACATTTTGGGAGATTGGAAGCTGGGAACAGAACACTCGAAATTGGAAAGTGTTGCCACAATGTAA
- Protein Sequence
- MNRQVDVKALVSHIIRGDGLDKCRICMGDTSQGQVHLGDTVMMDGDKPVTLSELLELITGVTVVTEEALPPALCLECSSSAIQAADFRTAVQNTNHQWTNMTQLLEHVPDHKYSETSDRICSLLCDNDIYISDSCTKPQQEEEICFSFKRLGKQVNCSCPTCGKSFSYPLHLYKHLKESLDLVRACHFCAQIMGRDELVKHLTDAHEVQPYICKTCPALFLDRQQFKQHMLKAHSPGRCTCGECGRSFKTHAAYHAHQSIEWTPCLPPRVCRACSTSITDFMPFFVLCRISAHKWKQTVNYLNTVTVDKQATTAYVLLDEEPQTLADRSTTKNKTPKDVLKNIRLRLNYIRASRKRSSANMTICKRKGSHKFSCPDCNKGGFEVLYKFNFHLNINKKHCCPHCYKIMNVNDFGKHLATHNLSSFECDVCNLHFEKETSLQRHKIYHNRGKFMCPECKYTFKSMDGLTIHTNYVHTTMRCACGKIFHGKGCYHVHKRRICPKKRTQSYICDYCAKPFTKKCTLGKHIENYHTVKSCEQCDQCGKTFKTKAHLKEHSYAHDRVLNRFTCEYCGKIYSTPRGFRRHMTRKHYQVDEETDLPPGLCRDCKDDIITAVSFKQLYQQSARFWDDATDYLTSIDEPSVEVKTSIIFYPEDKPVHNIIKPVPTTQNALDILNELKTTKLKKKRFTCSCPYCDKKFTCIEAKNEHFKYTWLRFCHKCGASVSKKKLARHLVTTHNIAVWDCKLCHDIFQRHCDVKRHFEKYHRPDLHLCVFCGTGFASETGLRAHSYFHTLFNCPCGAIFENARCYKYHISNCKPKKHEIEPNFECDYCGVVYDKKPSLRVHIVQKHLNVLPFVCQLCGKRASTIGHLRSHEKTHESQRKLVECHCGAKFRTDLGYKLHMRSHSGYKPYKCDQCDNSFISASRRLDHIKRRHKSSIEMQHGCNQCTSKFIRPWELKKHYLNAHGSVILEEDSCPIGACVGCASAALSAQEFRIFVRNSEKLWCKAIFNLSNLENEHEERAKSICAFVTPNDLTILTTKDYTGGEPKEIVNRSTATVKKTKRKARRHLTGPMSTCSECSKTFTSPFLLHEHLKNNGPKTACVTCGDVVFRGQGMLEHMASAHNQRLTMCLQCPCLFKNEKELSQHLKEGHKSGVFTCSDCGRSFQRKSTFEHHSQMHVVRTCRSCDRQFTNRSCYREHRTQCEPDAKPDKSTMPRNRRSNIRDPAVFICDYCNKKYSTRSQLKNHILWIHMDHRPHICQWCGKRFFTYGRMAEHSVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGEKPYKCEDCDATFISSSRRLEHAKRKHNKGTRIQCMLCPNSFVRKSELKKHMEKAHNTVDDGERNNDILGDWKLGTEHSKLESVATM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -