Basic Information

Insect: Alcis repandata
Gene Symbol: -
Assembly: GCA_949125135.1
Location: OX421244.1:4234706-4236433[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.093 7.4 7.9 0.5 1 23 82 105 82 105 0.94

2 16 0.00096 0.076 14.1 0.1 2 23 132 153 131 153 0.97

3 16 0.016 1.2 10.3 2.2 2 23 176 197 175 197 0.94

4 16 0.7 56 5.1 0.0 1 13 201 213 201 220 0.81

5 16 0.00094 0.075 14.2 1.8 1 23 230 253 230 253 0.93

6 16 0.0021 0.17 13.1 2.6 1 23 261 284 261 284 0.95

7 16 2.7e-05 0.0021 19.0 0.4 1 23 290 313 290 313 0.98

8 16 3e-06 0.00024 22.0 1.8 1 23 320 342 320 342 0.99

9 16 0.0005 0.04 15.0 1.8 1 23 348 370 348 370 0.98

10 16 0.0029 0.23 12.6 5.5 1 23 376 399 376 399 0.96

11 16 0.071 5.6 8.3 0.6 2 23 406 427 405 427 0.91

12 16 0.027 2.1 9.6 0.8 1 23 433 455 433 455 0.98

13 16 0.036 2.9 9.2 0.8 1 23 465 488 465 488 0.94

14 16 1.6e-05 0.0012 19.8 3.1 1 23 494 516 494 516 0.96

15 16 0.00026 0.021 15.9 2.2 1 23 522 544 522 544 0.97

16 16 4.6e-05 0.0037 18.3 0.1 2 23 551 573 550 573 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.093	7.4	7.9	0.5	1	23	82	105	82	105	0.94
2	16	0.00096	0.076	14.1	0.1	2	23	132	153	131	153	0.97
3	16	0.016	1.2	10.3	2.2	2	23	176	197	175	197	0.94
4	16	0.7	56	5.1	0.0	1	13	201	213	201	220	0.81
5	16	0.00094	0.075	14.2	1.8	1	23	230	253	230	253	0.93
6	16	0.0021	0.17	13.1	2.6	1	23	261	284	261	284	0.95
7	16	2.7e-05	0.0021	19.0	0.4	1	23	290	313	290	313	0.98
8	16	3e-06	0.00024	22.0	1.8	1	23	320	342	320	342	0.99
9	16	0.0005	0.04	15.0	1.8	1	23	348	370	348	370	0.98
10	16	0.0029	0.23	12.6	5.5	1	23	376	399	376	399	0.96
11	16	0.071	5.6	8.3	0.6	2	23	406	427	405	427	0.91
12	16	0.027	2.1	9.6	0.8	1	23	433	455	433	455	0.98
13	16	0.036	2.9	9.2	0.8	1	23	465	488	465	488	0.94
14	16	1.6e-05	0.0012	19.8	3.1	1	23	494	516	494	516	0.96
15	16	0.00026	0.021	15.9	2.2	1	23	522	544	522	544	0.97
16	16	4.6e-05	0.0037	18.3	0.1	2	23	551	573	550	573	0.96

Sequence Information

Coding Sequence: ATGGCTCCAGAAAACTGCGAGAAGATACACGATGTTGTCATCAAGAAGTTAAAGACTAAACCTGAACCGAAATCTGAACAGAAAGTGGTAGACTTATTGAAGAAGCATAAGATATACTGCAAGAAACCAGAAGAACCAATAGTAGATCACATGACAGAGTTAAACAAACATCGGCACAACATTATCACCATTGTTCAGAATTCCAACGCAACTCCGTTCAAAGCCTACCATGTGGACGATGGATTCGCTTGCTGCTTCTGTGATGACGTCTTCAAAATAGCCGCTGAACTAAAAGCGCACACAAATCAGCTACACATCAAAGACATTGACAAATTCAAAGAAAAGTCTACCTCCATCTTCACATATGTTGTAAAATTAGACGTTACAGAACTGACATGCAAAATCTGCAATGTTAGTATTAAAACGCTAGAAGAGTTGATCGCACATTTGCAATCACATGACTTAGATCTTTATACGGATATCAAAAATCAGATCGTGTCTTTCAAATTTGATTCCGACGCCTTATGTTGCATGTATTGTGGGAACGAGTtcactaattttaagtttttactagACCACATGAACGAGCATTACAAGAACTATGTTTGCGAAGATTGCGACGCTGGTTTTATAAACTTTAGGATTTTAGTAGCACATGCTGATGGTCAAGATCTTACTGTTGGAGAATTCAAATGTCCGATATGTGATACGGTGTTCGAGAAGTACACGAAATACAAGCATCATGAGTTGCTCGCTCACACAGGCTTCAATCTGACTTCACACGAATGCACACACTGCAAAGAAGAATTCAAATCAGATGAAAGTTTAAGAGAACACGTAGAAAAGGATCATGGAGGACAGCATAAATACAAATGTGGTGATTGTAAAAAAACGTACGTGTCTAAGAATTTACTAATAGGTCATGTCAGAAGAGTACATTTAACAGCGGATAAGTATTTCAAATGTGACGTCTGCGTCAGGAGTTTCTACACGAGACAGCAGCTCCAGAACCACATGCTGACTCACTCTGACATGAAGCAGTTCCAATGTGACATGTGCGGATTGAGGTTCATTTGCAAAGCGACGTTGGAACGACACATATACACCCACAAATTGAAAGGCAAACACAAGTGTCTGTTCTGCGAAGAGTCGTACATCAGGCTGTCTCATTTGAATCATCATGTACGCCAAGATCATTTGAATGATACGAGAACAGAGTGCAGCGCTTGCGGCAAGCTGCTTTACAAGTCACAGTTGAAGAAACACATGGCGTTGCGACATTCGGATCTACGAACGTTCACGTGTTCAGTTTGCTCGTTAGAGTGCGAGTCTAAACTTGCTTTAGTAATGCATATGAGCTCACATCCTAACTTGAAGCCTGAACAGAAAAAGCACGAATGCCGCGCTTGCGGTAAGATGTTTGACAAAGAGATGTATGTTATGAGGCACGCGCAAAGAGTCCATCTTTTAGAAAGGAGGTTCGTTTGCGATCACTGTGGCAAGCGGTTTGCTGATTGCACCACTTTAAAGAACCATTTAGCGCTACACGGCGAGGGTCCCGCGTTTCCATGCTTCGGATGCACCAGGGTGttcaaaacgaaaaaaagtATGTTCAACCACGCACGTAACCACATGGAAGAAAAGAAAGTCAAATGCGAAATTTGCCAACAAGCTTTCATATACCCTTATTTGTTGAGAGAGCATATGAAACAAGTGCATAGGATGTGA
Protein Sequence: MAPENCEKIHDVVIKKLKTKPEPKSEQKVVDLLKKHKIYCKKPEEPIVDHMTELNKHRHNIITIVQNSNATPFKAYHVDDGFACCFCDDVFKIAAELKAHTNQLHIKDIDKFKEKSTSIFTYVVKLDVTELTCKICNVSIKTLEELIAHLQSHDLDLYTDIKNQIVSFKFDSDALCCMYCGNEFTNFKFLLDHMNEHYKNYVCEDCDAGFINFRILVAHADGQDLTVGEFKCPICDTVFEKYTKYKHHELLAHTGFNLTSHECTHCKEEFKSDESLREHVEKDHGGQHKYKCGDCKKTYVSKNLLIGHVRRVHLTADKYFKCDVCVRSFYTRQQLQNHMLTHSDMKQFQCDMCGLRFICKATLERHIYTHKLKGKHKCLFCEESYIRLSHLNHHVRQDHLNDTRTECSACGKLLYKSQLKKHMALRHSDLRTFTCSVCSLECESKLALVMHMSSHPNLKPEQKKHECRACGKMFDKEMYVMRHAQRVHLLERRFVCDHCGKRFADCTTLKNHLALHGEGPAFPCFGCTRVFKTKKSMFNHARNHMEEKKVKCEICQQAFIYPYLLREHMKQVHRM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00033128;
90% Identity: -
80% Identity: -