Arep018619.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Alcis repandata
Gene Symbol
-
Assembly
GCA_949125135.1
Location
OX421241.1:8688615-8701595[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 4.8e-05 0.0038 18.2 6.9 1 23 195 217 195 217 0.98
2 13 2.6e-06 0.00021 22.2 0.2 3 23 231 251 230 251 0.98
3 13 0.00016 0.012 16.6 3.1 2 23 260 281 260 281 0.98
4 13 0.0015 0.12 13.6 3.2 1 23 287 309 287 309 0.98
5 13 1e-05 0.00081 20.4 1.3 1 23 315 337 315 337 0.97
6 13 1.9e-05 0.0015 19.5 8.4 2 23 344 365 343 365 0.97
7 13 0.00012 0.0095 17.0 0.8 1 23 371 393 371 393 0.97
8 13 1.8e-05 0.0014 19.6 1.8 1 23 399 421 399 421 0.98
9 13 8.1e-05 0.0064 17.5 2.2 1 23 427 449 427 449 0.99
10 13 0.14 11 7.3 0.7 1 23 455 477 455 477 0.95
11 13 1.8e-05 0.0014 19.6 0.4 1 23 483 505 483 505 0.98
12 13 2.9e-05 0.0023 18.9 0.8 1 23 511 533 511 533 0.99
13 13 0.0004 0.032 15.3 5.2 1 23 626 648 626 649 0.96

Sequence Information

Coding Sequence
ATGGCTGGACCAGCGatcaatattaaattaaagaatttGAACTTCGACAAAATATGTAGGGCCTGCTTGGAGATAAAGAGAGACATGCGACCATTGTTCGAGCAGCTCACAGCAACGATGCTGATGGACATTTCGAAAGTGCAGGTGGCGGTAGGCGACGGTCTGCCTTCGCAGCTGTGCCTTCAGTGTGTGCACCAGATCTCGCGCTGCCACGCTTTCAAGGATCTCGTCGAGCGAAATGATATAGCGCTGCGGGAACACGCCATGTATCTCGCGGAGGAGGCGATCAAGAAGGACCGGGAAGAGAAAGAGAAGATTATGCTAAACTGTGCGGACAGCTATATATACATGGACGTGCCAATGGCGACTTCTGCGCAAATCCTTGATGGGTTCttcgcgcccgcgccgcctgaCCTCGAACCTCCCAAAGATCTAGATCTCAAGAACTCTTTTGAAGTCAAGCCAGCAGTGGTTGCACCCACTACATCTGTTACGAAAGAGGAGGAAGTTCTCAACTCCGATGAGGAAAGCTATCTCCAACTGGTGGTGTTCCAAGCGACGTCCTCCGTGTGTCCCGGCCGGCACGTCTGCAACCTGTGCCATAAGGAGTTCAAGCACGCGCGCTGGCTAAAACAACACATGAGGTCGCATAGCAACTGGATCAAGGCCAACTGTAAGAAGCCGCCGATGTGCCCCATTTGTGAAAGGACTTTTAAGGGTCCAGGAATGTTAAAGATGCATATGCGTACCCACGAGCAACGTCCCCCGAAACAGCCGACGTGCTCCGTATGCCAGCGGCAGTTTACCACGAAAACCCTGCTGTATCGGCATCGTCAGACGCACTTTGAGCAGAAAACGCACCAGTGTACTTTCTGCGAGAAAAGGTTCTTCAGCGGATACGCGCTCCGGTCGCACATGGCGCGCCATAGAGGCGAGAGGCCTTACATCTGTTCTAATTGCAACAAGAGCTTCTACAATCCCACGGATTTGAAAGTCCACTTCCGCTTGCACACCGGCGAGAAGCCGCTGAAATGCAGCGAGTGCAACAAAACCTTCCGGCGGCACTCCACGCTCTGCCAGCACATGAAGAAACACAAGGGCATCAGGAACCACATCTGTACTGTGTGCAGCAAGGGATTCTATGAGATCTCCAAGCTCAATGCGCACATGAGGGTGCATACTGGCGAGCGTCCATTCGAGTGTCAGTTCTGCACGCGGCGGTTCGCGCAGCAATCCGCGCTGATCTACCACCGCCGCACGCACACCGGGGAGAAGCCCTACTCGTGCAAGCTGTGCTCGACCAGGTTCACCACCTCCTCCGCAAGGAACAATCACATGCTCACTCATACGGGGAACAAAAGGTTCGCGTGCCAGATCTGCATGAAGGGCTGCGCGTCGCGCACGGAGCTGCGCGTGCACTCGGCGCGCCACACCGGGGAGAAGCTGTTCGAGTGCGGCATCTGCTCGCAGCGGTTCAGCTCGGCCTCCTACCTCGCCGTGCACCGCCGGTACCACACCGGCGAGCGCAAGTACCAGTGCGCCGTCTGCGGGAAGGGATACATGGAATCCAGTTCATACAAAAAGCACTTGAAGACCCACGAGTCGAAAGACACGGACACCGCTAACTCTGAGAACAGTCAAGAGCAAGACGGCACCAAAGTCGACAACCAAAACGCAGACACTCCGTCCGGCAACGGAGCAGATGAGCAGGGCGAAATTCAAAATCAGGGTCAGCAAATCCACATCCAAGCTCAAAGTCAAATTCAGTCCCAAGGGCAAGTCCCAACTCAAATCCAAGTCTCTGAGCTACAAGACGGGCTCCACGAGGGCCTGCAGTCGCCGGCGGCCGAGTCGCCGCAGCCCCCGCAGCGCCGGTACAAGTGCGGAGTCTGCGTCAAGACTTACATGTATTTGCACAGTTTGAAGAAACATATGATGACTCATCATATGCAgCCacagcagcagcagcaacaacagcagcaacaacaacaacagcagcagcaacaacaacaacaacaacagcagcaTCAACAGCAAATTGTCCAACAGCAAGTcgtgcaacaacaacaacagCAGTTATCACAGCAACATCAGACACACCACATCCAGACGCAGCACCACCAGCTGCAGCAACACCAGCAACAGTTGCAGCAACAGCAACTCCAGCAGCAGGTGCTGCAAGTGAGCGGCGTGCAGCAACTCGCGGTGCCGATACACGCGCACGCGCAGCACGTGCCGCAGAGTATCACCGTCTCTGGCGTGCAGCAAGCGGGCCAGCATGCGTACCCGGTGATATCGTCGGTGCAGTCTCTACAGTTACAGCAGACGCAACAGGTTAACACGCAACCGCAACAACTGCACGTGCAAACGATACAGATCCATCCGCAGCAACAGCACCAGCCAATACAGATTCATGCGGTGGGAGTGCAACAAGTTCAGCAACAGCAGCTGCACGTCGCCACCTCTACTTGTCAGACTATGCTGCCGAATATTCTGCAGTTGCAGCCGGCGACGGTGGTGTCGGGGCTGGGTCAGCAGGAGTTGGGCGGCGTGGCGCACCGCATCATTCTGCAGCCGCAGCACCAGTCGTCGCACCCCGCCGTCTACACCATCCACCACTGA
Protein Sequence
MAGPAINIKLKNLNFDKICRACLEIKRDMRPLFEQLTATMLMDISKVQVAVGDGLPSQLCLQCVHQISRCHAFKDLVERNDIALREHAMYLAEEAIKKDREEKEKIMLNCADSYIYMDVPMATSAQILDGFFAPAPPDLEPPKDLDLKNSFEVKPAVVAPTTSVTKEEEVLNSDEESYLQLVVFQATSSVCPGRHVCNLCHKEFKHARWLKQHMRSHSNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRQFTTKTLLYRHRQTHFEQKTHQCTFCEKRFFSGYALRSHMARHRGERPYICSNCNKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHKGIRNHICTVCSKGFYEISKLNAHMRVHTGERPFECQFCTRRFAQQSALIYHRRTHTGEKPYSCKLCSTRFTTSSARNNHMLTHTGNKRFACQICMKGCASRTELRVHSARHTGEKLFECGICSQRFSSASYLAVHRRYHTGERKYQCAVCGKGYMESSSYKKHLKTHESKDTDTANSENSQEQDGTKVDNQNADTPSGNGADEQGEIQNQGQQIHIQAQSQIQSQGQVPTQIQVSELQDGLHEGLQSPAAESPQPPQRRYKCGVCVKTYMYLHSLKKHMMTHHMQPQQQQQQQQQQQQQQQQQQQQQQQHQQQIVQQQVVQQQQQQLSQQHQTHHIQTQHHQLQQHQQQLQQQQLQQQVLQVSGVQQLAVPIHAHAQHVPQSITVSGVQQAGQHAYPVISSVQSLQLQQTQQVNTQPQQLHVQTIQIHPQQQHQPIQIHAVGVQQVQQQQLHVATSTCQTMLPNILQLQPATVVSGLGQQELGGVAHRIILQPQHQSSHPAVYTIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00143240;
90% Identity
-
80% Identity
-