Arep021383.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- ZNF296
- Assembly
- GCA_949125135.1
- Location
- OX421244.1:8700454-8725510[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.073 5.8 8.2 0.2 3 23 127 147 125 147 0.95 2 16 0.00012 0.0092 17.0 1.3 1 23 236 258 236 258 0.99 3 16 4.5e-06 0.00036 21.5 3.6 1 23 264 287 264 287 0.98 4 16 0.0079 0.62 11.3 1.9 1 21 292 312 292 315 0.89 5 16 0.00011 0.0088 17.1 0.2 3 23 514 534 513 534 0.98 6 16 0.00013 0.01 16.9 0.2 1 23 540 562 540 562 0.95 7 16 0.00012 0.0096 17.0 3.5 2 23 631 652 630 652 0.97 8 16 0.0011 0.09 13.9 1.4 1 23 658 680 658 680 0.98 9 16 0.89 70 4.8 0.4 2 23 777 798 776 798 0.95 10 16 2.6 2.1e+02 3.3 0.8 1 21 804 824 804 825 0.89 11 16 0.00015 0.012 16.6 3.5 1 23 839 861 839 861 0.95 12 16 0.01 0.79 10.9 5.2 1 23 870 892 870 892 0.99 13 16 0.0011 0.089 13.9 1.2 3 23 941 961 940 961 0.98 14 16 0.0012 0.094 13.9 3.9 1 23 978 1000 978 1000 0.96 15 16 2e-06 0.00016 22.6 0.7 1 23 1006 1028 1006 1028 0.98 16 16 6.7e-07 5.4e-05 24.1 3.1 1 23 1034 1057 1034 1057 0.98
Sequence Information
- Coding Sequence
- ATGAACAACGCCATGATGGTGGACGTAGACCCGCTGAGCTCTTACGAAGCACAATATACCTACCCTCTACCAAATGCACCATACTACCAGCATCCCGACGCTACCCCGTACACATACAAGGATGCGCAGtcTCAAAACTACCCTCAAGTTCCGTACCGGCCATCTTTACCAGAACAAGCAGAAAACCCCAACTACATTCCAAACACAAGTGAAGATACTGCAAACAACGAACCCAATCCGTCTGAAAACGTTGAAGAAGAAGACATAAAACCCGATATCATACCGAAAGAGCCTGagaaaaagccaaaaaaagctcGAGTACACAAAAGTAGCtattggaataaaaaaatcacgGAGAAGGACTTCGCTTTCTACGGCTGCTCCATATGCAACATAGCTTATACGGACCTCCACAAACTTGACCAGCACGTTGTAATCCACGCCAACCGCCTCACAAGCTACGACCTACGGCTAATAAACCTAAAGAAACGTAAACGCCTCAAAAAAGCCAAGAAGAAACAGAAGAAAAACTCCAAAATCAAGAAAGAAGAGTGCGATCTTGAAATCAAGCCAGAAGACGGTTACATAGGTATGGAAAAGGCATCAGAATTCAATGGAGACGATAAAGTAGTAaagcaaaaagaaaataatgaaaataacccAGCGAATAGTAAAAATGCAAACACTCCGGGCCATGTAAACGTATATAAATGTTTCGGGTGCAACAAGCAGTTTGCAATAAGTTACTATTTGAGGATTCACGTTAGATCTCATACGGATGAAAAGCCGTATACATGCAGCAAATGCGGCCAGTGCTTCATAACCGCAAGCAAGCTGAACCGGCACACCAAGCGAATACACCTCGCGGTCCGCCACCAGTGCAGGATATGCTATAGGGTATTTAGCAGATTTGAGTTGCTGGTGAAACATTTTGACGGCCAACATCCCGAGGACAAGCTAGAAGGCGAACCATATGaCTACAACGCAATCCTACCATACCTAAAAGAGCTAGAAGAAGaattaaagaaagaaaaagaagttaAACCTAAAACAGAGGATTTGTGGGGGGAACCGCTGCCGGAAGACATTCCACAGCCTGCTCCGGAGCCCGAGGCAGCGGTGCAGGCTACAGCGGTCGTGTGTGAagatatgtttgttactaaacaAGAGGATAAGgttGCCCTACCCTCAAATATAGAATTCTACGATGAAAGCAAAGGGATGCAGTCAACAAATATTATAACGAACGAAATTAAAATCGACATCGAAGTCAAACAAGAGGTGGAAGACAATGAAGTGAATGATTATGGAATGGGTGATCACAGCTTCGGTGATCACGGGGTGGGTGATGATCATAGTTTCGGTGATCACGGGGTGGGTGATGATCATAGTTTCGGTGATCACGGTTTCCAGGATTCGGATGATGATGTTAAGGAAGAAGATCCAGGCTCGGACGAGGAGTACGTCCCCGGCCGCACGTGGGCCCGGCCGCACGCGGGCGCGCCGCGGAGCCCGAGGCCGGCCCGGCGCCCCGTGGACTGCCCCGTCTGCGGCAAGACTATCAACAGGAGGACCAACCTGCCGGTGCATATGCGGACTCATACTGGTGTGAAACCCTTCCCCTGTACGATTTGCAAGCGCGGCTACAGTTCTGCAAACTCTCTCAAACGGCACGTCGCGCTGCATGAGAGGTCGAAACTTGATAAAGACGATGTCGAACCTAAAGCGGAACCAGAGATTGAAATTACTGAAATAAACGAAGAAGTTTCGATGACGGACACTGCCAAAGACGACCCCGGCTCGGAAGAAGAATACTTCCCCTCCTCAACGTGGGCGCGCCCCCCCTCGCCCCCTCCCGCGgcccccggctcgcccccccggAACAAGACAACCTGCGAGATATGCAACAAGCAGCTCTGCTCCAAGACTTACCTCACGATACATATGCGGACGCATACTGGCGAGAAGCCGTTCTCGTGCTACATCTGCGGCCGCGGGTTCATCACGGGCAGCAAGATGCACCGACACGTGCTCACTCACGACGAGCCCTGGGAGGGTCAAGATCGAGTCAAACCGGAAGATGACACAAAGGTCAAAGTAGAAGCCGGAGCGGAAGGAAACGAAATCGAAGAAGATAAACCTGAAAAGGACTTATTAGAAAAAGCAAAAACTAGATTACTTTTGAAGAAAACCAAGAAATCGTTCTTCAATAAGAAAGGGAAGGAATACAAGAAATGGACGCACGTCTGCGAATTTTGTAATCAgaaATTCCTACATCTAGAAACATTACAAGTTCACAAGAAATGCCATGACGAGTCGGAGAACATGAAATGTTACTTCTGTTTGGAGACCTACACCGAAAAGGAGGCCTACAAGGAGCACGAGGCCTCCCATACGGGGCCTAAACCGTATTTATGTACTATGTGCGGGAATCATTACTCGAAGCGGGGACCAATGATTTATCACCGCAAAAGGTGCAAGGGGCAATCTAATCCAGACGAAGTCGAGAAGAAATATCTCTGCGAGTTCTGTAACAAGGCGTACAGCACTCACTCCAAACTACAGCGGCACCTGTCCTCCCACGCGGCGCCGCGCGTGTCCCTCCGCTACGAGTGCCCCGTGTGCGCGCACATGTTCCACACGAGGTACCATGTGCAGATGCATCTCCGGTCGCACATTAAGGAGGGACTAATTCTAGAAGAAAACCGCAACGCAGTACTGGCGATGGTTTTACAAAACGCTCGAAAAATACCCAAAAATACAGACATCGTGCCAACCACCGCCCTACCCGACCCCGGCGCAGATGAAAGATCACGTATCTGCAATATTTGCGGGCAGATATTCCAGCACTTCTTCTATCTCGAGGAGCATCTAAAGACGCACGGAACCAAACTCGCGCTCGAGGACCTGGACGAGGAAGAGGAAAAGAAACACACTTGCCAGGTTTGCAACAAGTCCTTCAAGCTGCCCTACTACCTAAAACTTCACAGCTACACCCACACTAAGGAAAAGCCCTTCATTTGCCAACAGTGCGGCAAAGGATTCATCACTAAAGGCAAGCTCAAAAGGCATCTCGAAACCCACCAAGGCCTCAAAAAGTACCAATGCCATATTTGCTACAAGTTTTTCACGAGACCAAGCTATCTCAGGATACATGTGAGGACGATACACGGGACGCAGGATTATAACTTCAGGGATTATGGGATTGGGGTGCCTATTGGGGCGTTGAGTCAGGAATGA
- Protein Sequence
- MNNAMMVDVDPLSSYEAQYTYPLPNAPYYQHPDATPYTYKDAQSQNYPQVPYRPSLPEQAENPNYIPNTSEDTANNEPNPSENVEEEDIKPDIIPKEPEKKPKKARVHKSSYWNKKITEKDFAFYGCSICNIAYTDLHKLDQHVVIHANRLTSYDLRLINLKKRKRLKKAKKKQKKNSKIKKEECDLEIKPEDGYIGMEKASEFNGDDKVVKQKENNENNPANSKNANTPGHVNVYKCFGCNKQFAISYYLRIHVRSHTDEKPYTCSKCGQCFITASKLNRHTKRIHLAVRHQCRICYRVFSRFELLVKHFDGQHPEDKLEGEPYDYNAILPYLKELEEELKKEKEVKPKTEDLWGEPLPEDIPQPAPEPEAAVQATAVVCEDMFVTKQEDKVALPSNIEFYDESKGMQSTNIITNEIKIDIEVKQEVEDNEVNDYGMGDHSFGDHGVGDDHSFGDHGVGDDHSFGDHGFQDSDDDVKEEDPGSDEEYVPGRTWARPHAGAPRSPRPARRPVDCPVCGKTINRRTNLPVHMRTHTGVKPFPCTICKRGYSSANSLKRHVALHERSKLDKDDVEPKAEPEIEITEINEEVSMTDTAKDDPGSEEEYFPSSTWARPPSPPPAAPGSPPRNKTTCEICNKQLCSKTYLTIHMRTHTGEKPFSCYICGRGFITGSKMHRHVLTHDEPWEGQDRVKPEDDTKVKVEAGAEGNEIEEDKPEKDLLEKAKTRLLLKKTKKSFFNKKGKEYKKWTHVCEFCNQKFLHLETLQVHKKCHDESENMKCYFCLETYTEKEAYKEHEASHTGPKPYLCTMCGNHYSKRGPMIYHRKRCKGQSNPDEVEKKYLCEFCNKAYSTHSKLQRHLSSHAAPRVSLRYECPVCAHMFHTRYHVQMHLRSHIKEGLILEENRNAVLAMVLQNARKIPKNTDIVPTTALPDPGADERSRICNICGQIFQHFFYLEEHLKTHGTKLALEDLDEEEEKKHTCQVCNKSFKLPYYLKLHSYTHTKEKPFICQQCGKGFITKGKLKRHLETHQGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRDYGIGVPIGALSQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -