Basic Information

Insect: Alcis repandata
Gene Symbol: -
Assembly: GCA_949125135.1
Location: OX421235.1:2471797-2475723[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0017 0.13 13.4 2.5 1 23 135 157 135 157 0.98

2 12 0.02 1.6 10.0 3.0 1 23 161 183 161 183 0.97

3 12 4.1e-05 0.0032 18.5 0.4 1 23 212 234 212 234 0.99

4 12 1.1e-05 0.0009 20.2 3.3 1 23 242 264 242 264 0.97

5 12 1.9e-07 1.5e-05 25.8 4.9 1 23 269 291 269 291 0.98

6 12 1.7e-05 0.0014 19.7 1.8 2 23 298 319 298 319 0.97

7 12 6.4e-08 5.1e-06 27.3 0.5 1 23 325 347 325 347 0.96

8 12 3.8e-06 0.0003 21.7 2.6 1 23 353 375 353 375 0.98

9 12 1.1e-05 0.00088 20.2 0.9 1 23 381 403 381 403 0.97

10 12 0.0063 0.5 11.6 5.2 3 23 411 431 409 431 0.98

11 12 8.1e-07 6.4e-05 23.8 1.8 1 23 437 459 437 459 0.99

12 12 0.00078 0.062 14.4 0.3 1 20 465 484 465 487 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0017	0.13	13.4	2.5	1	23	135	157	135	157	0.98
2	12	0.02	1.6	10.0	3.0	1	23	161	183	161	183	0.97
3	12	4.1e-05	0.0032	18.5	0.4	1	23	212	234	212	234	0.99
4	12	1.1e-05	0.0009	20.2	3.3	1	23	242	264	242	264	0.97
5	12	1.9e-07	1.5e-05	25.8	4.9	1	23	269	291	269	291	0.98
6	12	1.7e-05	0.0014	19.7	1.8	2	23	298	319	298	319	0.97
7	12	6.4e-08	5.1e-06	27.3	0.5	1	23	325	347	325	347	0.96
8	12	3.8e-06	0.0003	21.7	2.6	1	23	353	375	353	375	0.98
9	12	1.1e-05	0.00088	20.2	0.9	1	23	381	403	381	403	0.97
10	12	0.0063	0.5	11.6	5.2	3	23	411	431	409	431	0.98
11	12	8.1e-07	6.4e-05	23.8	1.8	1	23	437	459	437	459	0.99
12	12	0.00078	0.062	14.4	0.3	1	20	465	484	465	487	0.94

Sequence Information

Coding Sequence: ATGTTGGACACAGCAATGTTATCATCCTGCAGGTCTTGTATGAAAAATGATGTAAATCTAATTAATTTGTATGTATCAGTCATCAGCAGTGAAGAGAGCAACAACCCTCAACTAGCTCAATTATTGATGGAATGTACTACAATACAGGCGAAGCCAGATGATGAGCTGCCACAGAACATTTGCAAAGACTGTACCGAATTTCTCCAACAATATTTAACATTCCGCCAACAAGCCATCAAGGCAGACAACCACTTCAAAATGCTCCTTGAAGTAAAAGAAATCAAAATAGAAGTTTACCCCGAATTCAAAACAGAAAATGAACAAGACTACTTTGAAATTGAAACAAGCGATCATTATGAAATGGACTCAAATGACTGCGCAATAAAACCAGAGACAAATATCTTTAGCTGTAACCAATGCGATAAGACTTATGCTAAAGAAAAACGATACCTCAAACATTTACAGTCGCATTGTCTCCCCTTCCACTGTCCGTATTGCGAGAAGCAATTTCAAAAAGAGTTGTCATGGCAGAAACATGTCTCCAAACACAATGAAACATCAATGCATGATAGTATAAAGGATTTATACACCACAGCCATGACGATGACTGAAAACGGTACAGAGGAGTTCAAATACCAATGCCAACAATGTGGGAAATCATTCTTAAAACCAGCTGCATTATCCACACATATAAACAAACACGAAAGAGATAAAGACAAAGAATTTATGTGCGATACTTgcaataaatgttttgtttcaaaGCCCTTACTTAGGAGGCACCTGAAGTTGCACACTGGAAAACCTcataaatgtacaaaatgtgATAAAAGCTACTCGAGGAGTGATCAGTTACGATCACATATgaatacacacaaagaaaaTAAGCCGAATGTCTGTCCACATTGTAATAAAGCATTTGCACAAGTGTGCAGTTTAAAAGACCACATCCGGATACACACAAAAGAGACCCCGTACCTCTGCTCGGAGTGCGGTAAGGGATTCGCCAACAGCTCCAACCTGCGGCAACACATGCTGCGCCACACCGGAGCCAAGCCTTACGATTGTAAACTGTGTCCTAAATCATTTTGTACTAAAGGTCAGATGACGTCCCACATGGCGACGCACACGGGCGCGCACCCACACAAGTGCGACAAGTGCGGCGCCGCCTTCACCAAGCCCAACTCACTGAAGAAGCACGCCATGATCCACTCGGGGCAGCGGCCCTTCGGCTGCGACACCTGCCCCATGAGGTTCACGTGCAAAGACCACCTGAAGCGGCACTACCGCATCCACACGGGCGAGAAGCCCTACAAGTGCAAGTTCTGCGCGCGCGCCTTCACGCAGAGCAACGACCTCGTCAAACACATGCGCACGCATCTCGGACAGAACATTTACACCTGCTCAGTCTGCGGATCAGGGTTCCGTCTACAAAGCGAATTGAAACAGCACTACCCGGTCCACTTCTGCAACGACGATCCCACCGTCAAGACTCTCCTACAAACCGAGAAGATCATTCTAGAACAAGACAAGAACGATCTCGAACAAGAGAAGATCATGCAAGAGAAAATTCCAGAACAAATCCTGCCAGATATGCAAGTGACACAGACTATGCCCGTGCATGAAAAGTTCATGATAACTATTAACAGTGTGGATGGAAACATGGTGGCGATCAACATTGAACCGGAGAGCAGTATGCTGAAAGTGTAG
Protein Sequence: MLDTAMLSSCRSCMKNDVNLINLYVSVISSEESNNPQLAQLLMECTTIQAKPDDELPQNICKDCTEFLQQYLTFRQQAIKADNHFKMLLEVKEIKIEVYPEFKTENEQDYFEIETSDHYEMDSNDCAIKPETNIFSCNQCDKTYAKEKRYLKHLQSHCLPFHCPYCEKQFQKELSWQKHVSKHNETSMHDSIKDLYTTAMTMTENGTEEFKYQCQQCGKSFLKPAALSTHINKHERDKDKEFMCDTCNKCFVSKPLLRRHLKLHTGKPHKCTKCDKSYSRSDQLRSHMNTHKENKPNVCPHCNKAFAQVCSLKDHIRIHTKETPYLCSECGKGFANSSNLRQHMLRHTGAKPYDCKLCPKSFCTKGQMTSHMATHTGAHPHKCDKCGAAFTKPNSLKKHAMIHSGQRPFGCDTCPMRFTCKDHLKRHYRIHTGEKPYKCKFCARAFTQSNDLVKHMRTHLGQNIYTCSVCGSGFRLQSELKQHYPVHFCNDDPTVKTLLQTEKIILEQDKNDLEQEKIMQEKIPEQILPDMQVTQTMPVHEKFMITINSVDGNMVAINIEPESSMLKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00033116;
90% Identity: -
80% Identity: -