Arep025846.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- -
- Assembly
- GCA_949125135.1
- Location
- OX421252.1:5440701-5443067[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.4e-05 0.0019 19.2 5.8 1 23 6 29 6 29 0.95 2 19 0.00046 0.037 15.1 0.2 2 23 35 57 34 57 0.94 3 19 2.6e-05 0.0021 19.1 0.3 2 23 66 88 66 88 0.97 4 19 1.3e-06 0.0001 23.2 1.7 2 23 97 119 96 119 0.95 5 19 4.6e-07 3.7e-05 24.6 0.9 2 23 127 149 127 149 0.97 6 19 7.9e-07 6.3e-05 23.9 2.0 2 23 157 179 156 179 0.96 7 19 7.6e-07 6e-05 23.9 5.0 1 23 185 208 185 208 0.98 8 19 7.4e-05 0.0059 17.6 0.5 2 23 243 265 242 265 0.95 9 19 0.04 3.2 9.0 0.8 1 23 302 325 302 325 0.97 10 19 0.24 19 6.6 2.5 2 21 333 352 332 353 0.93 11 19 0.076 6.1 8.2 0.7 2 23 362 384 362 384 0.92 12 19 0.021 1.6 10.0 5.9 1 23 408 431 408 431 0.97 13 19 0.00016 0.013 16.6 0.9 2 23 438 460 437 460 0.96 14 19 0.00044 0.035 15.2 1.9 2 23 467 489 466 489 0.94 15 19 0.0077 0.61 11.3 2.2 1 23 495 518 495 518 0.97 16 19 0.2 16 6.9 7.1 2 23 526 548 526 548 0.95 17 19 0.00044 0.035 15.2 0.2 1 23 555 578 555 578 0.97 18 19 0.012 0.92 10.7 0.2 1 21 585 605 585 608 0.88 19 19 0.0014 0.11 13.7 2.9 2 23 622 644 622 644 0.96
Sequence Information
- Coding Sequence
- ATGTCCCAAGGCGATTTCATTTGTGACTATTGTAGTCGATCATTTACAAGGAAACACAATCTTCAGACTCACATAGAGAACTGCCATGCAACATCTTCAAGCTATTGCGAGATTTGCGACCAGAGATTTGGAAGCCCTAGTGGCCTACAGCAACATTTCTCTCGAGGTCACAACAGTTTTGACCAATCGTACCCCGAATGTGATCTTTGCGGGCGAATTTTCACAAGAAAGCAAAATATAATGTCTCATATGCTGACTGTGCATCTGCAAGGCAACGGGCCGGAGATCCGATGCGATACTTGTGAGAAAACGTTCACTACAGAACGTAATTTGAAGAGACACATGAAGTTGCTCCACAATCCTAATGTACAGTACCCCACGTGTGATGATTGTGACAAGACTTTTAAGAGCAAACATGCCCTCATCGCTCATATACAGACGGCTCACATCCAATCTGATAGGACCGTGAAGTGCCACATGTGTGATAAGGTTTACACTAATAACAGAAACCTCAAACGGCACATTGAAATGTTGCACAGGGAGAAAGAGGACCACAAATGCCATATCTGTCCTAAAGTATACACGTCCAATCAAAGTCTGAAGCGGCATATCAGGACTACGCATAACTCTGATGAAGACAGATCTCAATGCGAGCTGCAATTAATGAAACCTAATTATGACTGGCAAAGCAATGAGTCGAGTGATTCTTACGACAGCGACTACGTCTCCTGCGACACTTGCAACAAATCATTCGCAGAAGAGTCGCTTTTGCGCCGGCACGTCAAAAATAATCATTCTTTCGATGCCTTTTATGATTACTGCAAACGGCACTTGGAGAAACTAGAAAACAGCACCATTCAACAAAATGTTGGTGATGAGCCGACGATCAGTGGGCCGACCCTCTTCAAATGTGAATTCTGCTTATCTGCTTACTTCAACGTCTACGAACTGAAAGAGCACATGAAGGTCAATCACGATACTGAATACAGCTTGTCCACTTGCAACGTGTGCTTCTGCAAGTTCTACAGCAAAGAAACTTTGACTGGCCATAAGAAGATCTGCTTGCCGCCGCGCGATATTAACACGTGCAACTACTGCGACAAACTCTTCACGGATATCCTGAGTTTGGAGTTCCACACCAGGGTTTTCCATCCCCAAGCGCAGCTAGCCGATCCCAACATAACTTCTACGAAATCTGATGATGTTCCGAATCTGAGCCCGTTCAAATGCGTGCATTGCAACCGGATCTACTACAGTGATCGGTCTTTGAAGCATCACATCAAACTGAAGCACACCAGCGCAGAGGCGATGGAATGCGGGTACTGCAACAAGATATGCAACAACAAGTACTACCTCGCGTCGCACATCAAGATCGTGCACAGCATCGTAGACTTGTCAAAGTGCGACTACTGCGAGAAACTCTTCAAGTCGAAGCGCAACATCCGCCGCCATATCGAGTACACCCACATGGGGATGCAAAGATACAAGTGCATCGAATGCGAGACTCTGTTCAAAGAAAAGCGCAGTCTCCGCAAACACGTCCGCACAAAGCATCCCAACTCTACATCTTTCCCCCAATGCCATATCTGCCACAAGAGATTCGAATCCGCAAAGTCCTGCAAGATCCATCTAAAGCTGTTGCATTCGTTCAACATGAACACTTATCCTTGCGACTTGTGTTCAGTATCGTTCATGTCGAAAGAGGCTTTAAAGATCCATTTGGAAACCAAACATCTGGCTGAGGACGAGATTTACAAATGCGAAGAGTGCAACGTAGTCTTCAAAGGGTCGCAAAAGTTCGAAGAACACAACGTAATCGTTCATGCTTACATAAACCCCGTCTCCAGGCAGAAAGCTCTGCCGCGCTGCGTTATTTGCATGAAAGACTTCAGCACGCGAAAGACGTTGAAACGTCACATCAAGAAGTTCCACGGGGAATTCCACGCCGAAGATCTCGCCAACTACGGTTGTCACAACCGCGACTTCCAATTAGATTGCGATGACTGCTTGAAGAACATAAACAATGATTACTACACCAACTTGTACAACAGAATCAAGCATGTCAAAGACGCCATAGTTTTCAGATGCGACACATGTGACTCCACGCTTAGCGCAATAGAGTTTGCGATTTATAAGCATAGAGTGCGCGATGGAGAGAAGCCGCAGCTCATTCTGAGCAATCTGTGTACTACTCAAATGAGCGACGAGGAAGTTGGCTACCCTGAATTTGGGTCTCTACTGGAGTACATGGAAGCGGAAAGCACTACTGCAGACATCAAGTTGGAACCAGTTGAAAATGCCATGAATATGGAGCAGGATGAGATGAATGAAGCTGCAGTGGTGAAAATGGAACCAGATTCTTCTTAA
- Protein Sequence
- MSQGDFICDYCSRSFTRKHNLQTHIENCHATSSSYCEICDQRFGSPSGLQQHFSRGHNSFDQSYPECDLCGRIFTRKQNIMSHMLTVHLQGNGPEIRCDTCEKTFTTERNLKRHMKLLHNPNVQYPTCDDCDKTFKSKHALIAHIQTAHIQSDRTVKCHMCDKVYTNNRNLKRHIEMLHREKEDHKCHICPKVYTSNQSLKRHIRTTHNSDEDRSQCELQLMKPNYDWQSNESSDSYDSDYVSCDTCNKSFAEESLLRRHVKNNHSFDAFYDYCKRHLEKLENSTIQQNVGDEPTISGPTLFKCEFCLSAYFNVYELKEHMKVNHDTEYSLSTCNVCFCKFYSKETLTGHKKICLPPRDINTCNYCDKLFTDILSLEFHTRVFHPQAQLADPNITSTKSDDVPNLSPFKCVHCNRIYYSDRSLKHHIKLKHTSAEAMECGYCNKICNNKYYLASHIKIVHSIVDLSKCDYCEKLFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTSFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFMSKEALKIHLETKHLAEDEIYKCEECNVVFKGSQKFEEHNVIVHAYINPVSRQKALPRCVICMKDFSTRKTLKRHIKKFHGEFHAEDLANYGCHNRDFQLDCDDCLKNINNDYYTNLYNRIKHVKDAIVFRCDTCDSTLSAIEFAIYKHRVRDGEKPQLILSNLCTTQMSDEEVGYPEFGSLLEYMEAESTTADIKLEPVENAMNMEQDEMNEAAVVKMEPDSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -