Arep022405.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- -
- Assembly
- GCA_949125135.1
- Location
- OX421246.1:6818653-6820992[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-07 4.4e-05 23.8 0.3 3 38 15 50 13 57 0.85
Sequence Information
- Coding Sequence
- ATGGAACCACCTGCTAAAAAACCCCGTGGACAGTGGACGTTAGAGCAATTAGAAGCTGCAATGGCTGCTGTGAATGGAAGACAGTTGTCTCAACGTGCAGCAGCCGCGCGATATTCTATTCCTAGAAGAGCGTTAGTGAACCATCTTAAATCCGGAAAAGtagaaaaacaaatatgtcGCCGCACAATTTTAACTGCAGACCAAGAAAATGATCTTGCATCGAGGATAAAAAGGCTTGCTGCTGTGGGCTATCCTTTGACGCCCAAAGTAATACGTCATCAAGCTTATGTTTTTTGTGAACAACACAACATTCCGAATAATTTTAGCAAAACTACAAAAAGTGCAGGTAAGGATTGGCTAAAATTATTCTTAAAAAGACACCGAGATATCACAAAAAGAAAGGTGCAAATCTTAAATCCAGGCAGAGCTCAAAAACTAAATAAGAATATTGTAATGCAACATTTTgaagaatacaaaaaaatctacGAAGAACTTGATATCAGAAACCATCCTGAATACTTATATAATATGGATGAGAAAGGCTGCAGATTGACACTACACAAACAGCCCACGGTGTTAGCAAAAACAGGATCTAAAAGGGTGCATTTAGTTGCACCAGAACATGCTGAAAACGTGACAGTGGCGGCTTGCGTAAATGCTGTAGGATTTTCGATCCCTCCTATGATCATTTTCAAAGGAAAAAGGATGAAACCAGAGTTTACTGACAACTTACCTGCAGGATCACTAGTAAAAATGGCTGCAAAAGGAAGCATGACTTCGACACTTTTCGTAGATTTTATCCATCATTTAGGGAAGTACAAAATGGGAGGCAAGTGCTTGTTAGTTTTTGATGGCGCTTCCTGCCATCTGGATTATAAAATTGTGGAGGCAGCAGATGAGGAAAATATTGTACTGTATTGCTTACCCTCAAATACTACTCATGAGCTCCAACCGTTAGATAAAAGTGTTAATAAATCATTTGAGCACCATTGGGATGAAGAAACCTTATCATTTTTATATGAGCATCCAGACAAAAAACTTACCAAGGCACGATTTAACTCAATTTTTAGCAGAGTCTGGTCAAAATGCATGACACATAACAATATTGTTAATGGATTTAGAGCAACTGGGCTTTATCCCTTCAATCCCGAAGCAATACCAGTTGAAGCTTTTGCGCCAGCTGTACTAACCGAGAGATCTCCGCAGTACGAAAATGATATTTTTGGCCAAGGGTTACCCATTCCTGGCCCTTCGGGTACAAACATACATGCAGTAAATAGTCCCAACTTCAAAAGTTCTCAAAAGTCTCCAACTCCTGGTTCATCTGGTTTGACCGATCAACGACCCATAGAGAGTCCTGGCAGTTATAGTGCAGATTCTGACGAAACATTTTGTGAAGATCAAATTCCAGATTCTTCATCCACACAAGagcaaaatgtaattttaccgCAACTTTCAAGAAACACAGAACCAGtactcaataaaaaatgtttagtcGACTACAGCACAACTGATACTGATTCTATAAAATCAAACATGCAAGATGAAATAAACAGAAGGAATGCTGATATCAGAAGGCCAATATTATACAGATCTGATTCGGATACCTCTGCTGACGCAGCTATAATTTTGAGTCAAATGCCCAGACGTGGTGCTATCTGTAATGTGTACAGTTCTAccgatgatgaaaatgatgatcCATTGTTAAAACAACAAGAACGCACTCCCGAAAAGCAGGCGGAGACCTCTTCATTTGCAAATGTTGATACAATTAGGCGCCGCACTGTCTCATGTACAACAAGTGACGACGATTCGGAAGATAATATTATACCATTAGCAAGATTGAAATCcaaaaagattttcaaatctccATTTCAGCAGCTTATTCCAACACCTAACTTTGGTGTCGTTAAAGACAAACCAAGGCGTAAAGCTATCAACTATAAAGCTCGAGTAGTAACAAAAGACATATTTACAGAACGAGAAATgttaaagaagaagaaagaagaacgCTCTCAACAGCAAAAGAAAACATGTTCAGGAAAAAAGAGAGAAGTTTTAAATAAAGCCCAAAAGAGTAAAGCAAACGAGCGAGAAGGTAAGAAGCAAAAAAGCATTCAAAGAAAGGAGCTGAAAAGAGGCAAAACAAAGGAAACGACAGGAAAATTAtccaaaggaaataaaaaaggaGCTGCCGAGGACAAATGGTACTGTCATGCATGTAATGAAGAAAGGTTTGACGATATGCGACAATGCCCAATATGTCAAAGATGGTTCCACGAAGCATGTTTGGGTCTTACAGAGGAAGATATTGATTTTGAATGCCCTGTGTGTGGCTAA
- Protein Sequence
- MEPPAKKPRGQWTLEQLEAAMAAVNGRQLSQRAAAARYSIPRRALVNHLKSGKVEKQICRRTILTADQENDLASRIKRLAAVGYPLTPKVIRHQAYVFCEQHNIPNNFSKTTKSAGKDWLKLFLKRHRDITKRKVQILNPGRAQKLNKNIVMQHFEEYKKIYEELDIRNHPEYLYNMDEKGCRLTLHKQPTVLAKTGSKRVHLVAPEHAENVTVAACVNAVGFSIPPMIIFKGKRMKPEFTDNLPAGSLVKMAAKGSMTSTLFVDFIHHLGKYKMGGKCLLVFDGASCHLDYKIVEAADEENIVLYCLPSNTTHELQPLDKSVNKSFEHHWDEETLSFLYEHPDKKLTKARFNSIFSRVWSKCMTHNNIVNGFRATGLYPFNPEAIPVEAFAPAVLTERSPQYENDIFGQGLPIPGPSGTNIHAVNSPNFKSSQKSPTPGSSGLTDQRPIESPGSYSADSDETFCEDQIPDSSSTQEQNVILPQLSRNTEPVLNKKCLVDYSTTDTDSIKSNMQDEINRRNADIRRPILYRSDSDTSADAAIILSQMPRRGAICNVYSSTDDENDDPLLKQQERTPEKQAETSSFANVDTIRRRTVSCTTSDDDSEDNIIPLARLKSKKIFKSPFQQLIPTPNFGVVKDKPRRKAINYKARVVTKDIFTEREMLKKKKEERSQQQKKTCSGKKREVLNKAQKSKANEREGKKQKSIQRKELKRGKTKETTGKLSKGNKKGAAEDKWYCHACNEERFDDMRQCPICQRWFHEACLGLTEEDIDFECPVCG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00044422;
- 90% Identity
- iTF_00044422; iTF_00044423;
- 80% Identity
- -