Basic Information

Insect: Alcis repandata
Gene Symbol: clz9
Assembly: GCA_949125135.1
Location: OX421240.1:2655304-2658018[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.7e-08 6.7e-06 26.4 0.1 2 40 17 56 16 61 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.7e-08	6.7e-06	26.4	0.1	2	40	17	56	16	61	0.88

Sequence Information

Coding Sequence: atgCCACGAAATTATATTCGTAAAACCGACAGAGCGTTAACATACTCACAAGAAACATTAAAAGAAGCTGTTAACGCTGTTAAGACAGGTAAACTGTCAGGATATGTCGCttcaaaacattataaaataccCAGGTCGACCATTATAAATCATGTTTACGAACGCAGAGGCCTAAAGTCAAATACTTTGGGCAGATCGACCATATTGTCACGAGAAGTAGAAGAAAACCTTGTTAAGAATTTGCACATTATGGAAAAATATGGTTTTGGCCTTACACGTAAAGAGTTATTGGAAACAGTGGGACAATTTGTTTCCACAAATCATATTGAAAATACATTCAAGAATGGAACTCCTGGAGAAGACTGGTTCCTTTCGTTTAAAAAGAGACATAATTTGTCTGTGAAAAAGCCGCAACCTGTGGAATATGCACGAAAAAAAGCCTGTAGTCCAGGTGTTGTGTACCCATATTTTGAATTACTCGAGGAAACAGTGGACAAATTGGGGCTACGCGAAAAACCTTCACATATATGGAACGTCGATAAAACCAGTTTCAGCAAAGATCCGTGCAAGTCAAAAGTTGTTGGCGTCAAAAACTATACCTCAACAAGAACAATAGCATCACCTGGTAAAGACAACACTACTGTCCTATTAGGATGCAACGCAATAGGAGAAAAAACTCCACCTATGATCGTGTATAAAGGCAAGAACGTTTGGGATGAGTGGACAACTGAGGAAGGATATCCTGGTACAGCGTATGCTGCGACATCAAATGGCTGGATGGAAACAGCTGTTTTCGAGGCCTTTTTTGAAAAGGTATTTCTACCATTAGTAGGAGAAAAACGTCCTATCTTATTAGTGTATGATGGCCATTCCACACACgtaggtataaatataattgaaaaggcACGTGCAGCTGATATAACGATTTTGAAAATTCCCCCACACACCAGCCATATATTGCAACCGCTGGACCTCGcagtcaataaattatttaaggaTAAATGGGACGCCGCTCTAGTTAAGTGGCAGCGATTAAATATAGGTAAAGCATTACCTAAAAAAGAATTTGCGAAAATGTTGGGCCAAATTTGGACTACGTTGGAGCCTAATGTATGCGCAGCTGGTTTCCGAAAGGCAGGTATATACCCATTAGACAAAAACGTGGTATCAGAAGAAAAATTTGACCAAGAACTTTTACGAGAGTGGAAGCAAAAGAGACTGCATAATATTACAAGCACCAATGCAGAAGACGACACATACTCGCGTTCAGCTCGTGTAGCAAAATCTTTTAATGAGACTCAACACGATCGGCAACCTATAGGTCTACATGTCTCTGGCAACGATTTTAACTTCCAGATGGTTCAGTCTACTGCCAAAAAAATTAGTCCAGACTCACTAAGTACACTTACAATAGCTAGCATCAATTCCAAAATACACCAAGTACAAAGCTCTTATATCTGTAAACAGCAGGCGATGCAAACAAAATGCATTATCAGATATGACCAAAGTAACGTAACCAaactaaacaacaacaacaaccatGTACCAAAATGTTTGGATGACCACATTGCAACATATAAAGAGCGTTTAGACTTCAATAACCATTGTGACCAATACAATCAAGAAATTGTGAATTCTCCTCATAAGGACACACCGGAAAGACCTAATCCAAAATCGACAGTTCTGATACTTGAAAACAAAGtggtaaattataatattacatttGAAGAACTGCTGTTAAGATCAGTAAAAGCTGGAACcagctttaaaaataaaagaaagcgCATGGCTACTGGTGCAGAAGTAATTACTTCTGATGACGTCTACAAGAAAACAAAACTACTAGAAGAAGAAAAACTCAAAAAGCTAAATGAACAACTAGAAAAAAAGAATAaggttaaaatagaaaaaatgaataaaagtaATACAAGGAAAGAAATAACAGAAAAACAGAAATCTATAGCAATCAAGAAGGAAAGGGAACAAAACTATAAACCTAAAGCTAAAAAGCGAACTATTAAACGTCGAATTTCTTCTAATTCTATGAGTGAAAGTGAGAGCAAGATTGACTACCAGGATGAAAATGACTTTAAAGGCATCAAGAAAACTACAGTAATTAAAGAGGAAGGACTAATTCTAAATAAaggaataacaataaaaaagacCAGCGAacttaaaacgaaaaaaaaacgaaacttGCAACCTAAAGCTACACAACGAATTACGAAAAGTCGAATTTCTTCTTATTCTTCTAGTGAAAATGAGAGCGAAATTGAGTTTCAAGATGAAAGTGATGATGATTACGCAAGATATTGCATAGACGTCTTATCTTACTCagatgaaaacaaagaaaacaactCCGACGAGCAGATTAAAAGTGACATTAACCCTGATAATGACGTCATTAACAGAGTCTATAAAGACGAATGGCTATTGGTTAAGTTTTGCaccaaaaaaactataaaacactATGTGGGTGTAGTACATTCATATACTACTCCaacaaaatattatgataatgGCATCCCTATAATAAAATATGCCCGAAAAACAGTTTCAAAAAATGAAGGTAGTGTGTTCACTTTTCCTCCCGTCGACGACATATCCGAATTGCTTCATATCGAGGACATTGTTATGAAACTGCCAAAACCAATTATTGGTCGCAGAGggcaaataatttttaaattttcttttgataaCTATAACATTCAGTAA
Protein Sequence: MPRNYIRKTDRALTYSQETLKEAVNAVKTGKLSGYVASKHYKIPRSTIINHVYERRGLKSNTLGRSTILSREVEENLVKNLHIMEKYGFGLTRKELLETVGQFVSTNHIENTFKNGTPGEDWFLSFKKRHNLSVKKPQPVEYARKKACSPGVVYPYFELLEETVDKLGLREKPSHIWNVDKTSFSKDPCKSKVVGVKNYTSTRTIASPGKDNTTVLLGCNAIGEKTPPMIVYKGKNVWDEWTTEEGYPGTAYAATSNGWMETAVFEAFFEKVFLPLVGEKRPILLVYDGHSTHVGINIIEKARAADITILKIPPHTSHILQPLDLAVNKLFKDKWDAALVKWQRLNIGKALPKKEFAKMLGQIWTTLEPNVCAAGFRKAGIYPLDKNVVSEEKFDQELLREWKQKRLHNITSTNAEDDTYSRSARVAKSFNETQHDRQPIGLHVSGNDFNFQMVQSTAKKISPDSLSTLTIASINSKIHQVQSSYICKQQAMQTKCIIRYDQSNVTKLNNNNNHVPKCLDDHIATYKERLDFNNHCDQYNQEIVNSPHKDTPERPNPKSTVLILENKVVNYNITFEELLLRSVKAGTSFKNKRKRMATGAEVITSDDVYKKTKLLEEEKLKKLNEQLEKKNKVKIEKMNKSNTRKEITEKQKSIAIKKEREQNYKPKAKKRTIKRRISSNSMSESESKIDYQDENDFKGIKKTTVIKEEGLILNKGITIKKTSELKTKKKRNLQPKATQRITKSRISSYSSSENESEIEFQDESDDDYARYCIDVLSYSDENKENNSDEQIKSDINPDNDVINRVYKDEWLLVKFCTKKTIKHYVGVVHSYTTPTKYYDNGIPIIKYARKTVSKNEGSVFTFPPVDDISELLHIEDIVMKLPKPIIGRRGQIIFKFSFDNYNIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00044436;
90% Identity: iTF_00044436;
80% Identity: -