Arep010920.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- -
- Assembly
- GCA_949125135.1
- Location
- OX421231.1:13823675-13824421[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-09 3.3e-06 27.3 0.0 2 45 13 55 12 55 0.91 2 2 4.3 1.7e+03 -0.5 0.1 32 45 192 206 190 206 0.84
Sequence Information
- Coding Sequence
- ATGCCGCCAGTAAAAGGTCAGATGTTTCGATATTCTGAAGCCGATATGGAAGCAGCTGTACTAGAATGCAGACGAGGCGTCCCAACATCTACTGCGgcaataaaatttggtataccaagAGTGACTTTACTAAACAAAGTAAAGGGAAAAACACCTATGAAGCGCAAAATGGGGAGAAATTGTTACATGACTAAAGTCATAGAACGTATGCTAATAACATGGACAGAAGGAATGATGAAACAAGGCTTTCCAATTCGGAAAGACAGTTTGCAAGACAGTGCCAAGAAAATCGTTGATGACTTAAACATAGAAACCCCTTTTAAGGATGGCAGACCAGGAAATAAATGGTACAGAAGCTTTTTGAAACGGCACCCTGATATAATTATGACTAACTGGCAGCCCCAGCCAGTTACTGCAACCAGATCATCAGCCACATCATCTGAAGTCAAAAACTGGTTTGAAGAAGTAAGCAGTTACTTAAATGATAACAATTACAGCGAGATAATTAATAAACCTCGAAGAGTTTTCAACATGGACGAGACTGCTTTTTTTCTAAATCCTAAAGGAAACAAGGTCTTAGCAGCTAAAAGAAAACGATCAAAGTACCAAAAAATGAACACAGACGAAAAAGAGTGTTTCACTGTTTTTCTAGGAGGTAATGCAGCTGGGGATATTTTACCTCCTATGGTAATATTCAAAAATGAAAGAATACCGATAGAGCTAACCATGTCAGTGCCAGAATCATGA
- Protein Sequence
- MPPVKGQMFRYSEADMEAAVLECRRGVPTSTAAIKFGIPRVTLLNKVKGKTPMKRKMGRNCYMTKVIERMLITWTEGMMKQGFPIRKDSLQDSAKKIVDDLNIETPFKDGRPGNKWYRSFLKRHPDIIMTNWQPQPVTATRSSATSSEVKNWFEEVSSYLNDNNYSEIINKPRRVFNMDETAFFLNPKGNKVLAAKRKRSKYQKMNTDEKECFTVFLGGNAAGDILPPMVIFKNERIPIELTMSVPES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -