Arep019986.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- -
- Assembly
- GCA_949125135.1
- Location
- OX421243.1:7003148-7003543[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-09 8.3e-07 29.3 0.0 1 36 8 43 8 49 0.87
Sequence Information
- Coding Sequence
- aTGGCACCAAGAAAAGAGTATACAAAGGAACAAATTGCCAAGGCTATTGAAGATGTAAGAAAAGGAGAAAAGATATCTGTTGCCGCTACAAGATACGGAGTACCGAGAATAACATTGCATAATAAAGTCACTGGGAAAAGTCCTGTCGATTGCAATCTGGGTCCAGCTACTGTGCTTACATATGAGGAAGAAAGGATCCTTGTGAGGTGGATAACATTTATGGCTGAAAAGCACTTCCCTGTGACCAAAGAGCTATTGCTTGACAGTGTCCAGAAAATAATAACTGAGAATAATACAGATTCCTGCCCGTTCAAGAATAATAGACCGGGAAAAAAATGGTTCTCTTCATTTTTAAAAAGACATCCAGACATCTCTGAACGTACAGCACAAAATTAA
- Protein Sequence
- MAPRKEYTKEQIAKAIEDVRKGEKISVAATRYGVPRITLHNKVTGKSPVDCNLGPATVLTYEEERILVRWITFMAEKHFPVTKELLLDSVQKIITENNTDSCPFKNNRPGKKWFSSFLKRHPDISERTAQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01317225;
- 90% Identity
- iTF_00826837;
- 80% Identity
- -