Aseg003546.1
Basic Information
- Insect
- Agrotis segetum
- Gene Symbol
- -
- Assembly
- GCA_036375495.1
- Location
- JAQSVV010000021.1:3252708-3254342[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.01 0.91 11.1 0.6 2 23 237 259 236 259 0.95 2 10 0.084 7.6 8.2 1.5 2 21 265 284 264 285 0.92 3 10 0.0016 0.15 13.5 1.2 1 23 307 329 307 329 0.97 4 10 1.4e-05 0.0013 20.0 6.3 1 23 335 358 335 358 0.95 5 10 1.3 1.2e+02 4.4 1.8 2 23 366 387 365 387 0.91 6 10 3.7e-05 0.0034 18.7 1.2 2 23 393 414 392 414 0.98 7 10 0.012 1.1 10.8 2.6 1 23 420 443 420 443 0.97 8 10 0.0095 0.85 11.1 2.0 1 23 449 471 449 471 0.97 9 10 0.044 3.9 9.1 0.2 2 23 477 498 476 498 0.96 10 10 6.5e-06 0.00059 21.1 6.1 1 23 503 526 503 526 0.96
Sequence Information
- Coding Sequence
- atggcaAAAACACAGAGCGAACAAACGAAGAATATTGACTGTCGAGTATGTCTACGGTATGAATTAAAAACTCAGAAATGTTTGTCATTATTTGAAAAAAGCAACAATTCATTGATAGCAGAGAAAATTAAGTATGTTGCAAATGTTGAGATTAAGGAAAATGATGGATTACCTGGTAAAATATGTCCAGATTGCTTGTTGCAACTTGAAACGGCCATAGTGTTTAAACAGAAGTGTGAAAAATCTAACAAGATTCTCCTAAGCATTATTCAGCAGTCATCCAAAATATGTACAGTACCATTTCAAGTTCTGGTTAAGAAGGAAGTTACTGAAGATAAAAGAGACGAACATTCTAactctcaaatagaaaataaaaatattggaaaatctaaagaaaaaaattttgaaattgaagTGACCAATAATGATTTCCAAGACAAAGAAACACCTGCTAACACAAGATCTGATGTTAAAAAACAAGCCAATGTAGATCCtaaaaataacgaacatttaAATGCCTTATCTATTgatataatacctaaaaatgagGAACCTGACTATGAACTATATGACAATGaagaaataatatttgataCACAAGAAGATTACAAAGTCGAAAAGCTTGAGGATGAAGAAGAAAATGATAGATCTCAAGGTACAGCAGTCACAGTAGGAGGCAAACCGAGCAGGGCTATTGATTTGAAACTGATATGTGATGATTGTGGCGGATCCTTTAAAAGTAAATGTAAGATTGCTGTACACTGGAAGAAAGTCCACCTTCCCATGAAGCTTATTTGTGAAAGCTGCAAAAGAATGTTCCAAACTTATAAAGCTTTCAACAAGCACAAGAAAAGGAAAACAAGAAGCTGCCAAGCTGCCTCTACAGTCCGCATTGAAGGGATGGGGAAAAAAAGAATATTCCATTGCAAGGATTGTGAATATAGCACCAAAAGGATCAAGAATTTGGATGCTCACTTGGCTATACATAGCGGAGTCAGACGGTTCCAATGTAAGGACTGTTCCAAATGTTTTACACAGCACTCCTCACTGCAGGTACATCAGGAGTACAGCCACAAAGCCTATCACCGCATCACAACATGCCATGTCTGTGGCAAACTCATAAAAGGCCGTAACAGATTTTACAGTCACATCCTCCAACACAATACTAGATCAGTACAATGTGATGTCtgcaagaaaatattaaaaaataaaaaaaatttaatcaatcatCTGAAAAGACACGAAGGAGTAAAAAGTTACAAGTGTGAAACATGTTCAGCTAACTTCTATACAATGGGTGAACTCTGCAATCACCGTACGAAAGTTCATTTGAAGAAAAAGATATTTAAATGTGACATGTGTGAGTACACAGCTTACACAGCTACTTTattgaaaaaacataaatatcgcCATATGCAAAGTAATGTATCATGTTTACGGTGTGGCATGTTCCTTGAAAATGCAGAGAAATTGGCTATTCATCAGAAAAGGCATGAGGAAAACAATTTCTGTTGTCCTGAATGTGATAAAGGGTTCTGCCGTAGGTATTCACTTCGCAGGCACATTCTGAAAAAACACGCAGATACTAAATATTTGGAGAATTTTGTAAAAACTCTAAAACCAATTATATCATAG
- Protein Sequence
- MAKTQSEQTKNIDCRVCLRYELKTQKCLSLFEKSNNSLIAEKIKYVANVEIKENDGLPGKICPDCLLQLETAIVFKQKCEKSNKILLSIIQQSSKICTVPFQVLVKKEVTEDKRDEHSNSQIENKNIGKSKEKNFEIEVTNNDFQDKETPANTRSDVKKQANVDPKNNEHLNALSIDIIPKNEEPDYELYDNEEIIFDTQEDYKVEKLEDEEENDRSQGTAVTVGGKPSRAIDLKLICDDCGGSFKSKCKIAVHWKKVHLPMKLICESCKRMFQTYKAFNKHKKRKTRSCQAASTVRIEGMGKKRIFHCKDCEYSTKRIKNLDAHLAIHSGVRRFQCKDCSKCFTQHSSLQVHQEYSHKAYHRITTCHVCGKLIKGRNRFYSHILQHNTRSVQCDVCKKILKNKKNLINHLKRHEGVKSYKCETCSANFYTMGELCNHRTKVHLKKKIFKCDMCEYTAYTATLLKKHKYRHMQSNVSCLRCGMFLENAEKLAIHQKRHEENNFCCPECDKGFCRRYSLRRHILKKHADTKYLENFVKTLKPIIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00043936;
- 90% Identity
- iTF_00040227;
- 80% Identity
- -