Basic Information

Insect: Agrotis segetum
Gene Symbol: -
Assembly: GCA_036375495.1
Location: JAQSVV010000037.1:1206240-1214740[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.29 27 6.5 0.5 1 23 405 428 405 428 0.90

2 10 0.059 5.3 8.7 0.4 2 23 454 476 453 476 0.96

3 10 0.017 1.5 10.4 0.5 2 23 499 520 498 520 0.96

4 10 0.0045 0.41 12.2 1.7 1 23 524 546 524 546 0.96

5 10 0.0019 0.17 13.4 1.3 1 23 551 574 551 574 0.94

6 10 0.045 4.1 9.0 0.6 2 23 582 604 582 604 0.91

7 10 8.5e-05 0.0077 17.6 3.0 1 23 611 634 611 634 0.97

8 10 0.00024 0.021 16.2 3.4 1 23 640 662 640 662 0.97

9 10 9.9e-05 0.009 17.4 3.4 1 23 668 690 668 690 0.98

10 10 6.1e-06 0.00055 21.2 2.0 1 23 696 719 696 719 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.29	27	6.5	0.5	1	23	405	428	405	428	0.90
2	10	0.059	5.3	8.7	0.4	2	23	454	476	453	476	0.96
3	10	0.017	1.5	10.4	0.5	2	23	499	520	498	520	0.96
4	10	0.0045	0.41	12.2	1.7	1	23	524	546	524	546	0.96
5	10	0.0019	0.17	13.4	1.3	1	23	551	574	551	574	0.94
6	10	0.045	4.1	9.0	0.6	2	23	582	604	582	604	0.91
7	10	8.5e-05	0.0077	17.6	3.0	1	23	611	634	611	634	0.97
8	10	0.00024	0.021	16.2	3.4	1	23	640	662	640	662	0.97
9	10	9.9e-05	0.009	17.4	3.4	1	23	668	690	668	690	0.98
10	10	6.1e-06	0.00055	21.2	2.0	1	23	696	719	696	719	0.98

Sequence Information

Coding Sequence: ATGTCTGCGGAAAAAAATGAGATACAGACGTTTTTTGGGAAATGTAGGTGTTGTCTTTCCTATGGCTACTTAAAAAACATGTGGACGGAACATCAATTCGAAGGAGAAGCCGAAGTCTACGGCGAAATGCTTGTTCAATGTTTTGCTATGGCCtgggaagtCACAGACGATTCAATGGAACAGGATCAGATTTGCGAGCAGTGCATTAGTCGGTTACGGGATGCCCATGACTTTAAGAAGGTCATCCTGGAATCACAAGAGCAGCTGGTTCAACAAATTGATGATGACAACAAAGATATCATCAAAGAAGAAAGACTAGAAGAAGACATAGAAGAACATAGTGATATAGGTGATGATACTGCGGACACCATGAACTATGACATAGAGTACACTATGGACACCGCTGACACTCCGAGTGTCAAAGATGAGACAGAGTATGAAGAGATTGAGTTTTTAGAAGATGAAGACAATTCGGGAGTGAATGAAACGGTTGATACTGACTCCTCACATGCAACAGTTCCTTGTAAACAACCCAGAAGGAAGAAACAGCCCAGAGAATCCCTCCCAGAAGGTGACAGTGACACACCAAAGCGCAAATGGCCGAAGAAGCTACCAAAATCAGAACGCCTCAAGACTTACAAACAATATTCTGAAATCGAACTGAAGAAATGTATTGAAGAggtcaaaaataatgtgattacaCCTTCTGAAGCGTCTTTGAAATATGACATACCGAAGAAGACTATTCATGCCAAAATCAGACGGGAAGGACAAAATGTCCTGATTGACAATACAACGAAATACAAATTGGAACGATCTAAAAAGAAACTGAGGAAAACACCCACCATCTTTAAAGACCAAGCATCATTACTGGacgaaaaaactaaaaaacttatagagctgaataaattaaaagcaaaaagattaaaaaatgaGATTGTTGTAGCTATaaaagatgatgaaataaataaacaagcaaACGTGATACCTATAGAGTATGATATTGAGCCTAAAATAGAAGAGATGGAGGTACCTGTGAATGCAGACCAAATCAGGACCCGATACAAGGCAACAGTCAATGACAAATTCAAGAAAGGAAACAGAGAACGTCAAAAACTTGAAATTAACGAAATGAACaaacataaacataatataagcattatattacaaaattctaacgcAACGGTCATCAAAGGATATTGGGGAACTGGTTATTCTTGTAACTTTTGCGATCAACAGAGAGAATTACCATCAGAATTAAAACAACACAACTTGGAAACTCACAATAATTTAACAGATGAAGTCGTCAAAGTAAAATACGTATCAGATTTAGTTATAAGACTAGACATTACCGATCTCAAATGCAAACTATGCAACGCAAATATAAACTCTTTGGAAGAGTTTACGGAACATCTAAGAAAAATACATTCCAAAATCATACACACGGATATTAAAAACCATATAATTCCATTCAAATTCAACACGGATAACTTACAATGCGTCATGTGTGCGAAagagtttaaatatttcaagCTCCTTTCGGAGCACATGAGCGAGCATTACCGGAACTACGAATGCTCGTTTTGCGAGCGTGCCTTTATAAATAAGCAATCAATGCAAACACACAGTTATAGACATAACAAGGGAATTTTCAAATGCTCACATTGCCCTAAAGTTTTTGATTCGAGACCGAAGAAAAACGTGCATGAGAGAGCAGTGCATGCTCTTTCTAATAAAACACGAAAATGCTCGTTTTGTAGCGAAAGATTCGCTTCTAAAGACTTAGTGCAAAGCCATGAGGTAAAAGTCCACGGTGTAAAACCTCCTGTGTTCTCTTGCCAAGCTTGTAATAAATCTTATAATAGCCAAAGTTCGCTCACAAATCATAGAAAGCGCTATCATTTGATGTTAAGACCCCACAAATGCTCCTACTGCGACATGACATTTTTCTCCAAAGTTGAATTGCGATCCCATACTGTGACTCATACGAAATCGAGGAATTTCAAGTGTGATATGTGCACGAAATCTTTTGGGACGCGATGTAGTTTAAATCAGCATGTTAGAGGACATTTAGATGATAGGCGATTCAAATGCGATGATTGTGGACGGACATTTGTCCATAGGACTGCTTGGAAAGGTCATATGAGGAGTAAGCATAGTCGGATAGTTTAA
Protein Sequence: MSAEKNEIQTFFGKCRCCLSYGYLKNMWTEHQFEGEAEVYGEMLVQCFAMAWEVTDDSMEQDQICEQCISRLRDAHDFKKVILESQEQLVQQIDDDNKDIIKEERLEEDIEEHSDIGDDTADTMNYDIEYTMDTADTPSVKDETEYEEIEFLEDEDNSGVNETVDTDSSHATVPCKQPRRKKQPRESLPEGDSDTPKRKWPKKLPKSERLKTYKQYSEIELKKCIEEVKNNVITPSEASLKYDIPKKTIHAKIRREGQNVLIDNTTKYKLERSKKKLRKTPTIFKDQASLLDEKTKKLIELNKLKAKRLKNEIVVAIKDDEINKQANVIPIEYDIEPKIEEMEVPVNADQIRTRYKATVNDKFKKGNRERQKLEINEMNKHKHNISIILQNSNATVIKGYWGTGYSCNFCDQQRELPSELKQHNLETHNNLTDEVVKVKYVSDLVIRLDITDLKCKLCNANINSLEEFTEHLRKIHSKIIHTDIKNHIIPFKFNTDNLQCVMCAKEFKYFKLLSEHMSEHYRNYECSFCERAFINKQSMQTHSYRHNKGIFKCSHCPKVFDSRPKKNVHERAVHALSNKTRKCSFCSERFASKDLVQSHEVKVHGVKPPVFSCQACNKSYNSQSSLTNHRKRYHLMLRPHKCSYCDMTFFSKVELRSHTVTHTKSRNFKCDMCTKSFGTRCSLNQHVRGHLDDRRFKCDDCGRTFVHRTAWKGHMRSKHSRIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00042984;
90% Identity: -
80% Identity: -