Aseg015482.1
Basic Information
- Insect
- Agrotis segetum
- Gene Symbol
- -
- Assembly
- GCA_036375495.1
- Location
- JAQSVV010000126.1:103726-134614[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.3 1.2e+02 4.4 0.2 1 23 499 521 499 521 0.95 2 11 0.00064 0.058 14.8 1.8 1 19 535 553 535 557 0.90 3 11 0.00043 0.039 15.4 2.0 1 23 563 585 563 585 0.98 4 11 1.5e-05 0.0013 20.0 2.3 1 23 592 614 592 614 0.99 5 11 2.7e-06 0.00024 22.3 0.4 1 23 620 642 620 642 0.93 6 11 3.5e-05 0.0031 18.8 0.2 1 23 648 670 648 670 0.98 7 11 1.9e-05 0.0017 19.7 1.6 1 23 676 699 676 699 0.95 8 11 0.00012 0.011 17.1 2.6 1 23 705 728 705 728 0.96 9 11 7.7e-05 0.007 17.7 1.5 2 23 735 756 734 756 0.97 10 11 1.3e-05 0.0012 20.1 1.5 1 23 762 784 762 784 0.97 11 11 0.034 3.1 9.4 0.1 1 23 790 814 790 814 0.93
Sequence Information
- Coding Sequence
- ATGAACCAGTGTTGCTTCATCTGCAACGCACGAGCTGGCCTCTCACTAATGAGATGGAATGCTTCAAATCTGTTTGATGAGAAAaATTTATTGCAGTCGGGCAAGAAACTAGCGGAGGTTGTGGGTGAAATTGTGGGCAAGCCAGTGGTTCAGAATAAAGTTCATACcaatataatatgtaaaaaatgCCTTAAAACATGCACCGAGTATGATAGCATTCAAGTCAGattacaaacaataaaagaaGATTTACTAGGCCAATTCAAGCAATCATTACCTCAGCATAATTTAGATTATGACAACTATGAGAAGAATGTATATTCTCCACCGAAGCCAAACCCTTTATTGGGGAAGAAGCTTGTGTTGCCAGCATCTAAATTACAACCGATACCTCCAGATTTATTGCTCAAAGTGGGGAAATTAGCATCTTTCTCCCAAGCTAATATGATGCTGCCACAAATTAAGCCTTCTACTGCCTCAACTTTAAACCTAAAAGTAACAGTTGGATCTTCAGTTCTCacacaaacaataaaaacaacaaatagtAAACCGCTAGAAAAACCAACATTAGACTCAAATTCGATCCTCACTTCACTCACAAACGCTTTGAAAGATGACCTCGAAAGTCTAGTGACGGTACAAAGTAATATGAACTCTATGAGCCCAAAGAATTCAATATTGAGTTTCAATGTAGATTCTTTGCCTAAGGATTTTCTTTCTGGAGCTATTTTGAGGAAGATTGAAGAAAAGGATGATGAGTTTGAAAAGGGTGATGAAGCTAATGATGATCATCCGATGGAAATTGATGAAGactGCTTGTCTGTGGTTCCTGTGACGTCAGCGGATGGAAACATGGTGCTACAAGTTGAAGGACTACAGGAGTCAAAGTCGGACCCAACACCGGCAGTCAGCGAATACCTGAACCTCCCATCACTGGACGGAGGTGATGAAGTGAGCGACGCACAGAAGTACATCCTCGGCAAGCTGGAGATACTCAACGAGGGTGATGACGACGATGATGATGGTGAAGGACATACAATAGTAGTAGACAGCGAAAATGGTTCCATACTCCGCATGGTTGCCGGACAAAAGTTCATCTACGAGGGCGGAGAGATATCACTGGTGATGCCCGAAGATGATGAGCAGCAGGACGGTGACGGGGATGGTGATCAACAGGACAACGGTGATAGTCAAGACTCTAATGATGAATCTCAGATCGAGTTACAAGTATCGGGCGATGAGGAAACTGCGAACGCTATTATTGCAGCCGCTCAGGAACAAGGAGGTGCTTTCATAAAGGTGGAATCAGGTGAGATGTACCGCGTGAAGTCAGTGTCGAGCTCCACCGCCGACAACTGCGTGCCGCTACAGATGGTGGCGCAGCACGGAGATTTGTTCAAGTGTCTGCTGTGTGAGAAGAATGATGAAAACACTCCACTTGAAGATGCAGACACAATGATGCGTCATCTGAAGACGCAACACGACGCCAGAATATACCTGTGTCGGTTCTGTGGCGCCGTCATGAGGAAACGGACGGAATACGCAACGCATATAGCGTCCCACGTGCCCTCGTCCACTGCTGGTCCCACCCGCGCCGGCCCACACCGCTGTCCCACCTGTGGGAAGTGCTACAGCTCACGCGCGCTGCTGGCCGAACACGACAATGTACACCGTGGGGCGCGGCCCTACGTCTGTACCAGCTGTGGGAAGGCATTCGCCTCCAAGTACACGCACCAGGCACACTTGAAAACTCATGCGGTTCGCCCGCGTCCCTACAAATGCAGTCAATGCGGCAAATCGTTTCTTACACAACAAAATCTAAATCAACATGAGAAAACACATTCGGGAGTCAAAGATTTCGTCTGTAATATATGCAacaaAGCGTTCAGTACACAACATAACTTGGAAGTCCACGGTGTTGTTCACTCCGGTAACAAGGCGTTCGTGTGTACCGTGTGTCGGAAGGCATTCGCCAGGATGGCTGAGCTCAGGGACCATACCAGGATACATACCGGAGAGCGTCCATTCGCGTGCGACATATGCGACGCACGCTTCACCCAGCGCTCGAACCTGCACTCACACCGACGAGCCACTCACTTCGACGACAAGCGGTATCACTGTGAACTTTGTCCTAAGAGGTTCAAGAGGAGGAGACTACTAGAGTACCATATCAAGGCGTCCCACACGGGCGAGCGTCCTCTGAAGTGCGGCGTGTGTCAGCTGACCTTCGTGTACCCGGAGCACTACAAGAAACACGTGCGGACGCACAGCGGGGAGAGACCCTACACTTGTgagATATGCGGCAAGTCGTTCAACTCTCGCGACAACCGCAACACGCACCGCTTCGTGCACAGCGACAAGAAGCCGTACGAGTGTGTCGCGTGCGGCGCCGGCTACATGAGGAAACAACTTTTGTACGCGCACATGAACACTAGCGGTCATTTGAACGGTTCTATAGTTGTGAATCAACCTAGAGTTATCAAAGTTACTGAAgGCACAAATCAACCGGTAGAAATAACTAACGTTGAAGCGAAGAATACTAAGTTTGATTCGaTATTTGGAAGCAGTGAGCTAGAGGCGAGCGTCAATTCTgTGAAAGCGGAAGAGGAAGTGAAACTAGAAGATGCCAAATTCTACATAACAGAAGATAAGAAATTGATATTACAAGATAGTGATAATATAGGAGAGAGAGCCGAGGGAACTATTCTAGAAGCAGTAGACGCTGATCAACTTGGAGAACAGACTGAGaTAGTAGCAAATGATGAAAATGGCGGCATGGTGAGACTTATACAGATCAAGCTGCCGGATGGAAATAATGGATGGGTTGCTATCAACcgttga
- Protein Sequence
- MNQCCFICNARAGLSLMRWNASNLFDEKNLLQSGKKLAEVVGEIVGKPVVQNKVHTNIICKKCLKTCTEYDSIQVRLQTIKEDLLGQFKQSLPQHNLDYDNYEKNVYSPPKPNPLLGKKLVLPASKLQPIPPDLLLKVGKLASFSQANMMLPQIKPSTASTLNLKVTVGSSVLTQTIKTTNSKPLEKPTLDSNSILTSLTNALKDDLESLVTVQSNMNSMSPKNSILSFNVDSLPKDFLSGAILRKIEEKDDEFEKGDEANDDHPMEIDEDCLSVVPVTSADGNMVLQVEGLQESKSDPTPAVSEYLNLPSLDGGDEVSDAQKYILGKLEILNEGDDDDDDGEGHTIVVDSENGSILRMVAGQKFIYEGGEISLVMPEDDEQQDGDGDGDQQDNGDSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVSSSTADNCVPLQMVAQHGDLFKCLLCEKNDENTPLEDADTMMRHLKTQHDARIYLCRFCGAVMRKRTEYATHIASHVPSSTAGPTRAGPHRCPTCGKCYSSRALLAEHDNVHRGARPYVCTSCGKAFASKYTHQAHLKTHAVRPRPYKCSQCGKSFLTQQNLNQHEKTHSGVKDFVCNICNKAFSTQHNLEVHGVVHSGNKAFVCTVCRKAFARMAELRDHTRIHTGERPFACDICDARFTQRSNLHSHRRATHFDDKRYHCELCPKRFKRRRLLEYHIKASHTGERPLKCGVCQLTFVYPEHYKKHVRTHSGERPYTCEICGKSFNSRDNRNTHRFVHSDKKPYECVACGAGYMRKQLLYAHMNTSGHLNGSIVVNQPRVIKVTEGTNQPVEITNVEAKNTKFDSIFGSSELEASVNSVKAEEEVKLEDAKFYITEDKKLILQDSDNIGERAEGTILEAVDADQLGEQTEIVANDENGGMVRLIQIKLPDGNNGWVAINR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00726717;
- 90% Identity
- iTF_00040160;
- 80% Identity
- -