Basic Information

Insect: Agrotis segetum
Gene Symbol: -
Assembly: GCA_036375495.1
Location: JAQSVV010000074.1:525800-551613[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.8 2.5e+02 3.4 0.1 3 23 112 132 110 132 0.95

2 18 0.0059 0.54 11.8 0.1 2 23 136 158 135 158 0.95

3 18 2 1.8e+02 3.9 3.9 2 23 209 231 208 232 0.91

4 18 0.007 0.63 11.6 0.6 2 23 390 412 389 412 0.95

5 18 0.034 3 9.4 0.1 1 20 420 439 420 441 0.94

6 18 0.0022 0.2 13.1 0.6 2 23 451 472 450 472 0.94

7 18 10 9e+02 1.6 1.5 1 23 488 511 488 511 0.84

8 18 0.00071 0.064 14.7 1.7 1 23 520 543 520 543 0.94

9 18 0.41 37 6.0 0.3 3 23 624 645 623 645 0.86

10 18 2.3e-05 0.0021 19.4 0.9 1 23 679 701 679 701 0.95

11 18 0.00027 0.024 16.0 1.8 1 23 708 730 708 730 0.98

12 18 0.00011 0.0095 17.3 2.3 1 23 735 757 735 757 0.96

13 18 0.00037 0.033 15.6 2.3 1 23 763 785 763 785 0.98

14 18 1.6e-06 0.00014 23.0 1.0 3 23 793 813 791 813 0.97

15 18 0.00047 0.042 15.3 3.5 2 23 820 841 820 841 0.98

16 18 0.0037 0.33 12.5 0.7 2 23 849 871 848 871 0.97

17 18 0.0002 0.018 16.4 1.0 1 23 876 898 876 898 0.97

18 18 0.004 0.36 12.3 1.6 2 23 905 927 904 927 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.8	2.5e+02	3.4	0.1	3	23	112	132	110	132	0.95
2	18	0.0059	0.54	11.8	0.1	2	23	136	158	135	158	0.95
3	18	2	1.8e+02	3.9	3.9	2	23	209	231	208	232	0.91
4	18	0.007	0.63	11.6	0.6	2	23	390	412	389	412	0.95
5	18	0.034	3	9.4	0.1	1	20	420	439	420	441	0.94
6	18	0.0022	0.2	13.1	0.6	2	23	451	472	450	472	0.94
7	18	10	9e+02	1.6	1.5	1	23	488	511	488	511	0.84
8	18	0.00071	0.064	14.7	1.7	1	23	520	543	520	543	0.94
9	18	0.41	37	6.0	0.3	3	23	624	645	623	645	0.86
10	18	2.3e-05	0.0021	19.4	0.9	1	23	679	701	679	701	0.95
11	18	0.00027	0.024	16.0	1.8	1	23	708	730	708	730	0.98
12	18	0.00011	0.0095	17.3	2.3	1	23	735	757	735	757	0.96
13	18	0.00037	0.033	15.6	2.3	1	23	763	785	763	785	0.98
14	18	1.6e-06	0.00014	23.0	1.0	3	23	793	813	791	813	0.97
15	18	0.00047	0.042	15.3	3.5	2	23	820	841	820	841	0.98
16	18	0.0037	0.33	12.5	0.7	2	23	849	871	848	871	0.97
17	18	0.0002	0.018	16.4	1.0	1	23	876	898	876	898	0.97
18	18	0.004	0.36	12.3	1.6	2	23	905	927	904	927	0.96

Sequence Information

Coding Sequence: ATGTCTTCGGATGACTCTGATGATGAGCCGCTATCACTTATAGCAAGTAAGAAATTAAGCCCAGAGCAACATGAAGAGATGTCATCAGGTTCTTCGGAAGCTCCAATCAAGAAGAAAAAGAAGCTACCACTTAAACGATTGTCGGTCACGATAAATCTTCAGCGAAAGAAAGCTTGTCTTCAACCACCAGTGGTGGAGCGGCCGGCAGACGTGTGGCTTTACCTTAAAGACCTGAATCCTTCGGGACCTTACAGCTGCTTACTCTGTCCAGATTGGTTCATAAACAGATCGAAAATGATTGTACATTATGTTCTAAATCATAAGAAAGATTTCTGTGGTATTTGTAGatattttgtgCCCGATAGAGACGCTTGGGTGAACCATGTGAAGTTCCATACTCCCTGGCCATGCTCTCAATGTGTAGAGAACTTTGAAACAGAAGCTGATCTCCGAAATCATCTGCAATCTCAACATAATCTTGTGCACTGTCGCCTATGTCATTTCCGTGTACTGGATGGTGAGCCCTACCACTCACATTTGTTCCAAAAACACAATGTCTTCAATGTGTCAAATAGAAATGAGGAAAATCTTTGGGAGTTAGAATATGATGGCACTTCAAACTTCCTCTGTTTACTTTGTAATAAATCTACCAACTCAACAAGAACATTCTTCAATCATTATATGGGGTATCACCACTTTACCTTAAAATGTTTCACAGCACTGTTGTCAGGTAGACATGTACCATTCTTAGTGTATGGTGCGGATCTTAGAGCAGAGTTTGTTGAAGAACAACTAAAACATCACGAGAGATATGGCTATGTGGACTCTGAGCTCAAACCTACTGACTCTGCTATAGAGGCTGACCAAAATGAGACTAGAGACTTAATCAAAGTCCTCATACCAGAAATTAAACAAGAATTAGAGACCATTGAGGATGCAAAAAATGATGATGGAACTGAGAAGTCCAAGGATGATGAAACTAATGATATTTACAAAAGCTACAATggtattgatgattttgatgtTACTGCATTGGAACTGATAGTTGTACAGAAATGTTACTATGATTACATTAGTGATATATTGTCAGATGTTAATGCTAAATCTTTTTTTGAATATTCAGATGTTGATTATGACAAGCTTTCAACAGAAGTACCTATGGATATAGTTTGCACACTGTGCAGCATCCGGTATAGTACTCTGACAAGTTTTACTGCTCATATGTTCAAGATGCACTGCATAAAGTCCTTGCCGTTGTTTTCCTGTAGAATTTGTGCCGCCACTTTTGAGAGTCAACAAGATCTTGAGAATCACACATCAAATGAGTTAGGAGAATTTGAGGATCTTTGGATATGTCAGTTTTGTGACAAAGAGTTTGACGACAGAGAGAACACACGGCGACATCTCACTGAACATTGGGATGATGTAGAGTATGACAACTGTTTCAGTCCACATTTAGGTTTCAAATGTCGGTATTGTCCAACACTATTTTGGCATGAGACGGACAGAGAGACACATCAAGTGCGAGCGCATTTCTTTAATCATAAAGATGCGTATTACAAATGTGATACCTGTAATGAAATGTTTAGTGATAAGGTCTGGTTTATCCACCACTACATTGAGAAGCACAGTACTCCAGAAAAGACTGCACTCTCACTGTACCTCCTCAAATGTTCCCTCTGCTGTGTAGTGCTGCCAACTATCGAGGAGATGAGGGCCCACTTCAACTGTGATCATGCTGAAGCTAGGAAGGTGTTCTGTTCTCTAGACTCCTGTCAGTACAAGCCTTTGAGCCATAGGAAGTCTTTCAAGCTGCATTTGCGGTCGATGCACTCGTCTCGTTCGTCGCGTGCGGACCGTGCCATGGACTGCGTAGTGTGTGGTCGCGAGTTCAGCAGCTCGCGGGCGTGTGGCGCGCACATGGCGCAGGCGCACGGCCCCGGCAAGTTCAAGTGCAAGCTGTGTAGGGAGATACTGCACACTGTGGATGAGAGGAAACTTCACTACTTAATAAGTCACCCGGGACAGCATCCGTTCGCATGCCCAGACTGTGGCAAGTCATTCCAGTACAAGTCATCGTTGTACATGCACAAGCAGGACCATCTGCCTAACAAGCAGAACTACACCTGTACCTACTGCGGGAAGACTTTCTTGAAGCGCGATTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGGCGCCACACGGGCGAGCGACCCTACGCCTGCCCGCACTGCCCCAGGACCTTCGCCGACAAAGGGGCCTGTAACTCACACACCAGaaCTCATTTGAAGGATACATCTTATGGGTGTGTGTACTGCGGCAAGACGTTCGTTCAGAAGTCCAAGCTCACGTACCACATCAGAAAACATACTGGAGAAAACTTGGAGACCTGCACAGTGTGTTCGAAGTTGTTCACAAGTGCGTGTTCTTTGCGGGAACATATGAAGACGCACGAACCTAAGAAGTTGCTAGTCAAGTGTCCGCTTTGTGAGCGCAAGTACCAGGACGAGCGCTACATGCTGCGTCACCTGCGCACGTCGCACACGCACGCGCAGCACCCGTGTCCCATCTGTAACAAGATGCTCAGCAGCACGGCGGGACTGAGGCACCACGTCATGACGCACAGCAACATGAAGACCATCAGGTGCAACATGTGCCCAAAAGCGTACTCAGTGAAGCGTACAATGCTCAAACATTTCCGACGTCGGCACGGTTTCAAAGGGACGGAACCAAACATCAAAGACTTTTACACGAGAGTGGACCCTAGAGAGTGCAACTTGGGCCTCGACGAGTCTATCTTGATCAGTATATTTGGACCTCCGACAAAGAAACCGATGGTTGAGCTATTAGTAGGAGATTACGTTACTCTTACTAACCTAGAACGGCCTCGACAGACAGAAGGAGAGAAAGACTCGGAGACTACACAAGACTCCCAGATAGAGATGGTTTCTCAGGAGGAAGAAGAATATCTTAGAGAGAATGACAAGGATAGAGATGTGACAAAGGAGAGGGAAATAGTTATAAAGATCGAGCCTCCAGAAACAGCTGAACATCAAGAAGGGGAACTGGAGCCCACTGATTTTGTTAGCGTTAAGATTGAACCAATGGATGAGCATGTTGATGATTAG
Protein Sequence: MSSDDSDDEPLSLIASKKLSPEQHEEMSSGSSEAPIKKKKKLPLKRLSVTINLQRKKACLQPPVVERPADVWLYLKDLNPSGPYSCLLCPDWFINRSKMIVHYVLNHKKDFCGICRYFVPDRDAWVNHVKFHTPWPCSQCVENFETEADLRNHLQSQHNLVHCRLCHFRVLDGEPYHSHLFQKHNVFNVSNRNEENLWELEYDGTSNFLCLLCNKSTNSTRTFFNHYMGYHHFTLKCFTALLSGRHVPFLVYGADLRAEFVEEQLKHHERYGYVDSELKPTDSAIEADQNETRDLIKVLIPEIKQELETIEDAKNDDGTEKSKDDETNDIYKSYNGIDDFDVTALELIVVQKCYYDYISDILSDVNAKSFFEYSDVDYDKLSTEVPMDIVCTLCSIRYSTLTSFTAHMFKMHCIKSLPLFSCRICAATFESQQDLENHTSNELGEFEDLWICQFCDKEFDDRENTRRHLTEHWDDVEYDNCFSPHLGFKCRYCPTLFWHETDRETHQVRAHFFNHKDAYYKCDTCNEMFSDKVWFIHHYIEKHSTPEKTALSLYLLKCSLCCVVLPTIEEMRAHFNCDHAEARKVFCSLDSCQYKPLSHRKSFKLHLRSMHSSRSSRADRAMDCVVCGREFSSSRACGAHMAQAHGPGKFKCKLCREILHTVDERKLHYLISHPGQHPFACPDCGKSFQYKSSLYMHKQDHLPNKQNYTCTYCGKTFLKRDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACNSHTRTHLKDTSYGCVYCGKTFVQKSKLTYHIRKHTGENLETCTVCSKLFTSACSLREHMKTHEPKKLLVKCPLCERKYQDERYMLRHLRTSHTHAQHPCPICNKMLSSTAGLRHHVMTHSNMKTIRCNMCPKAYSVKRTMLKHFRRRHGFKGTEPNIKDFYTRVDPRECNLGLDESILISIFGPPTKKPMVELLVGDYVTLTNLERPRQTEGEKDSETTQDSQIEMVSQEEEEYLRENDKDRDVTKEREIVIKIEPPETAEHQEGELEPTDFVSVKIEPMDEHVDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00758517;
90% Identity: iTF_00040111; iTF_00042879;
80% Identity: -