Aseg030650.1
Basic Information
- Insect
- Agrotis segetum
- Gene Symbol
- -
- Assembly
- GCA_036375495.1
- Location
- JAQSVV010000619.1:5738-16225[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.005 0.45 12.0 0.6 1 23 60 82 60 82 0.92 2 23 0.28 25 6.5 0.2 1 23 155 177 155 177 0.96 3 23 0.0032 0.29 12.6 0.2 1 23 181 203 181 203 0.96 4 23 0.6 54 5.5 1.4 1 14 208 221 208 223 0.91 5 23 0.22 20 6.9 0.0 3 23 296 317 294 317 0.93 6 23 0.012 1.1 10.8 3.8 1 23 339 361 339 361 0.96 7 23 0.17 16 7.2 0.5 1 23 422 444 422 444 0.92 8 23 0.28 25 6.5 0.2 1 23 517 539 517 539 0.96 9 23 0.0011 0.1 14.0 0.2 1 23 543 565 543 565 0.97 10 23 0.2 18 7.0 1.5 1 23 686 709 686 709 0.95 11 23 0.65 59 5.4 0.1 2 23 734 756 733 756 0.93 12 23 0.33 30 6.3 0.1 1 23 780 802 780 802 0.92 13 23 0.0002 0.018 16.4 0.2 1 23 806 828 806 828 0.98 14 23 0.00021 0.019 16.4 0.5 1 23 833 856 833 856 0.96 15 23 0.015 1.3 10.5 0.4 2 23 863 885 863 885 0.93 16 23 0.14 13 7.4 6.5 1 23 892 915 892 915 0.96 17 23 0.00025 0.022 16.1 4.3 2 23 922 943 921 943 0.96 18 23 0.00028 0.025 15.9 1.7 1 23 949 971 949 971 0.98 19 23 0.021 1.9 10.1 0.4 1 23 1108 1130 1108 1130 0.97 20 23 0.015 1.4 10.5 0.4 2 23 1156 1177 1155 1177 0.96 21 23 0.022 1.9 10.0 4.6 1 23 1216 1238 1216 1238 0.96 22 23 7.2e-06 0.00065 21.0 0.9 1 23 1244 1266 1244 1266 0.98 23 23 0.083 7.5 8.2 0.9 3 23 1271 1292 1270 1292 0.97
Sequence Information
- Coding Sequence
- ATGTTTTCAATAGGTGACGAACTGTCTGACGCAGAATGCCTAGAAAGAACAGAACTCAAGGCACAGATcgcagaaagaaagaaaaccttTACAGATGATCTAAAAGCTAGGACAAGACACGCAACAATACTGCTGGAATCCACGAAAATATGCCCGTTTAAATGGATGAAACATCTTTATGTTTGCTTCTATTGCCATCAACAATTTCCCGACCCGGCAACTTTGAGGCTACATAACGCAGAACACGGGTTACTGTCGACATCCCAAGTCAAATATGCTTTATCAAAACTAAAGAAGTATGAATTAGTCAAAGTTGATATCACTGATGTAGGATGCAAGCTCTGTGATGATCTGATACCAGATTTTACGACACTAAAACGGCATCTACTagaaaaacataagaaaaatttGGACCCGAAATCTGGGGATGGTGTAATACCGTTCAAAATTACGCACAACGAGTTCCCTTGCGCTCTCTGCATGGAAAAGTACGCAGAATTTAAATCTCTAAACCAACATATGAACGTACATTTCCAAAATTTCATTTGCGAGCAATGTGGCACTGGTTTCATGACTCCAGAACGTTTAAGAACTCATGCATTTACGCACGAAACAGGTTCCTTTCCATGTGATAGCTGTCAGAAAGTTTTTAGGAACAAAACAAAACGAGCTATCTTCAGAAATAATATAACCACAATCATGGAATCGTGCACCGCATACCCTTTCAAGTACAGAAAAGGAACTTACCTATGCTTTTTCTGCAAAAACACATTTCTAGAACCAGAAAAATTGAGAGAGCACAACCAACTTCAACATGCCGAAGTAAAACAGTTACTAAAACCCAGAAAATATGAACCGTTGAAAATGGATTTCGCAACAACGATATGCAAAATTTGTGGCACGGAAATCGGTGATTATGCTGAATTGAAAATACATCTGAGTCTTGAACATAGCAAGATTATAGACTGTACGTATGGAGACAGCGTGGTGTCATATAAACTGAGCAAAGAAGAGCATAGTTGTCAAATTTGTGGGAAGACTTATGAGATGTTCCTCAGTCTACATAAGCATATGAATGATCACTACGAACATTTTATCTGTGACGAACTGTCTGACGCAGAATGCCTAGAAAGAACAGAACTCAAGGCACAGATcgcagaaagaaagaaaaccttTACAGATGATCTAAAAGCTAGGACAAGACACGCAACAATACTACTGGAATCCACGAAAATATGCCCGTTTAAATGGATGAAACATCTTTATGTTTGCTTCTATTGCCATCAACAATCTCCGGACCCGGCAACTTTGAGGCTACATAACGCAGAACACGGGTCACTGTCGACATCCCAAGTCAAATATGCTTTATCAAAACTAAAGAAATATGAATTAGTCAAAGTTGATATCACTGATGTAGGATGCAAGCTCTGTGATGATCTGATACCAGATTTTACGACACTAAAACGGCATCTACTagaaaaacataagaaaaatttGGACCCGAAATCTGGGGATGGTGTAATACCGTTCAAAATTACGCACAACGAGTTCCCTTGCGCTCTCTGCATGGAAAAGTACGCAGAATTTAAATCTCTAAACCAACATATGAACGTACATTTCCAAAATTTCATTTGCGAGCAATGTGGTACTGGTTTCATAACTCCAGAACGTTTAAGAACTCACGCATTTACGCACGAAACAGgaCTGGACTCCGAAATACCGGGTACGAAGCGAAGAATCATCCCGATATTCCAAGTAGCTTACGACAGGAGTTTATGTAGGCCTCTAGGAACCTTGATCCCTCTCAGTAGACACCGCCAAAAGAGTGTCAACAACTCTCCATCTCCATCTAAAAATTTTTCTCCAACGCGCAGTCCATCTCCTGTTTACCAATCGATGGCACCATCGCCTTTCATTGATACTTCGCCTAATTTATCAGTCCAAACTGTAAAGCCAAAAGAACCAAAAGCGAAGAAGACTCCTGATATCCGGCAGAATGCCTTAGCCGTGTTTGAATTCTCAACGGTCTACCCCTTCGTTTATGGGAGTAACAAATTCAAATGCTTCGTTTGTTCCCAACCGTTTTTGGACTTAAACGAATTGAAGTTGCATATGCACTTATCTCATACCTTCGCTCCTTTGAAAAGATTAGTTAACAATAGAAGAGAGAATGTCTTGAAAGTTGATGTCAGTGATATAAGTTGCAAGATATGTTCAGAAAAACCTCCTAGCCTTGTAGAACTCAAGCGCCATCTCAAAGAAATACACGAAGTACCAATGGATTTGGAAATCCAAGATAATATGATACCGTTCAATTTGAAACTTGTCGACGAAGCTTATAGATGCGTTATATGCGATCAGAACTTCATAAAAGTTAGAATTTTAGTCATACATATGAGTGAACATTTCAATAATTACAGCTGTGAGATCTGCGGATCAGTCTTCATGACTTTAAGACTTCTAAAGAAACATTTAGAAGTCCATGATTCCGGGAACTTCCCTTGTGACCGTTGCAACAAAGTTTTTAGTACTCCTTACAAAAGAACTTTGCATATACGTGGTGTACACTTGAAACAGTGTCCGAGAAGATGTCCTATGTGTCCGGAGAAGTTCAACTCAAATTATAAACGGACGATTCACTTGCAGGATGTTCATAATCAAGAAACTAGGGTTCATAAATGCAAGACTTGTGGTCGAGGATTTAACTTGAAGTATCACTTGGTGTGTCACGTTCGTTCTGTTCATCTTCAAGAGAGGAACCAGCAGTGTGCTGTTTGCCATCAACGGTTTTGTAACAAGGAGTCTTTGAAACGTCACATGGTGATCCACACTGGAGAGAAAAATCATAAATGTGATGTTTGTGGAATGGCGTTCTTGAGAAGGAAGAATTTGAAAGACCACTTGCGTTTGCATGATATTAGAATCATCCAGAAATCGAATTCAACAATCAGTCTGAAAGACGGAGATGGAAATGATATTAAACTTACAGTTCTGAAATATCCAATCCCTTTAAATTCTCTAGAATATGAATTAGAAGATAACACTGCAAGCGATCAGAAGCAAAAGAAAATAAGCAAAGTGAAAGAAGCTAAGAAGTTGGGGAAAATATCTTTGTTGAAAGAACCTGTGTCTATTAAAAACATTGAATGGAAAAACCAAAATGAGCAAGAAAACTCAGTAACGTTTAATGTGAAAACTGTACAAGGATTTATTCGAGCACCAACAAGACAAAAAACTGAAAATACTTCTACATTCACACAGAATGCTTTGACCATCTTCGAAAACTCTTACGTGTATCCATTTGTACATTCAGCTAACAAATACAAATGTTACGTCTGCTCCAAGCCTTTTCTGGATGCTAATTTGCTGAAAGATCATACGAACGAACATACAAACAAAGAAATGAAACGAGCACTCACAAATAGAGTGAGAGACCAAACTGTTAAAGTTGATGTGACATATCTTCAATGTAAAATCTGTTTGCAATCATTATCTGATCTACAGACcttgaaaatacatttaaagGAGCATGGGAAGAATATACAGCCGAATTCGCAGGATAATATAATACCTTTCAAGTTAGGAGGTCAGAATTTTGAATGCCAAGTCTGCGGagaaaaGTCGGTCCATCTCCAAGAGAGAAATCACGAATGTCCAATGTGTAGTTCCAGATTCTTCTCGAAGTATTGTCTATCGAGACATATGGTAATACATACTGGGGAGAAGAATTTCAAATGTGATGTTTGTGGTAAGGCGTACGCAAGAAGGAGGAATCTTCGAGAGCATAGCAAGTCTCATGATGTTGGATTGTGTAGCATTTGTGGATTGAACTGTGGCGATCATAATAGTTTGGTCGCTCATTTAAACAGTGTTCACTGA
- Protein Sequence
- MFSIGDELSDAECLERTELKAQIAERKKTFTDDLKARTRHATILLESTKICPFKWMKHLYVCFYCHQQFPDPATLRLHNAEHGLLSTSQVKYALSKLKKYELVKVDITDVGCKLCDDLIPDFTTLKRHLLEKHKKNLDPKSGDGVIPFKITHNEFPCALCMEKYAEFKSLNQHMNVHFQNFICEQCGTGFMTPERLRTHAFTHETGSFPCDSCQKVFRNKTKRAIFRNNITTIMESCTAYPFKYRKGTYLCFFCKNTFLEPEKLREHNQLQHAEVKQLLKPRKYEPLKMDFATTICKICGTEIGDYAELKIHLSLEHSKIIDCTYGDSVVSYKLSKEEHSCQICGKTYEMFLSLHKHMNDHYEHFICDELSDAECLERTELKAQIAERKKTFTDDLKARTRHATILLESTKICPFKWMKHLYVCFYCHQQSPDPATLRLHNAEHGSLSTSQVKYALSKLKKYELVKVDITDVGCKLCDDLIPDFTTLKRHLLEKHKKNLDPKSGDGVIPFKITHNEFPCALCMEKYAEFKSLNQHMNVHFQNFICEQCGTGFITPERLRTHAFTHETGLDSEIPGTKRRIIPIFQVAYDRSLCRPLGTLIPLSRHRQKSVNNSPSPSKNFSPTRSPSPVYQSMAPSPFIDTSPNLSVQTVKPKEPKAKKTPDIRQNALAVFEFSTVYPFVYGSNKFKCFVCSQPFLDLNELKLHMHLSHTFAPLKRLVNNRRENVLKVDVSDISCKICSEKPPSLVELKRHLKEIHEVPMDLEIQDNMIPFNLKLVDEAYRCVICDQNFIKVRILVIHMSEHFNNYSCEICGSVFMTLRLLKKHLEVHDSGNFPCDRCNKVFSTPYKRTLHIRGVHLKQCPRRCPMCPEKFNSNYKRTIHLQDVHNQETRVHKCKTCGRGFNLKYHLVCHVRSVHLQERNQQCAVCHQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHDIRIIQKSNSTISLKDGDGNDIKLTVLKYPIPLNSLEYELEDNTASDQKQKKISKVKEAKKLGKISLLKEPVSIKNIEWKNQNEQENSVTFNVKTVQGFIRAPTRQKTENTSTFTQNALTIFENSYVYPFVHSANKYKCYVCSKPFLDANLLKDHTNEHTNKEMKRALTNRVRDQTVKVDVTYLQCKICLQSLSDLQTLKIHLKEHGKNIQPNSQDNIIPFKLGGQNFECQVCGEKSVHLQERNHECPMCSSRFFSKYCLSRHMVIHTGEKNFKCDVCGKAYARRRNLREHSKSHDVGLCSICGLNCGDHNSLVAHLNSVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -