Basic Information

Insect: Agrotis segetum
Gene Symbol: -
Assembly: GCA_036375495.1
Location: JAQSVV010000603.1:31217-42275[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4e-06 0.00036 21.8 1.7 1 23 223 245 223 245 0.98

2 9 3.8e-08 3.4e-06 28.1 1.6 3 23 253 273 251 273 0.98

3 9 0.00013 0.012 17.0 0.3 1 23 279 301 279 301 0.98

4 9 1.4e-05 0.0012 20.1 1.7 1 23 307 329 307 329 0.99

5 9 2.8e-05 0.0026 19.1 1.7 2 23 508 529 507 529 0.96

6 9 3.7e-09 3.3e-07 31.3 1.6 1 23 535 557 535 557 0.98

7 9 0.0031 0.28 12.7 0.6 3 23 565 585 563 585 0.97

8 9 8e-05 0.0072 17.7 1.5 1 23 591 613 591 613 0.99

9 9 0.025 2.2 9.8 0.8 1 23 619 643 619 643 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4e-06	0.00036	21.8	1.7	1	23	223	245	223	245	0.98
2	9	3.8e-08	3.4e-06	28.1	1.6	3	23	253	273	251	273	0.98
3	9	0.00013	0.012	17.0	0.3	1	23	279	301	279	301	0.98
4	9	1.4e-05	0.0012	20.1	1.7	1	23	307	329	307	329	0.99
5	9	2.8e-05	0.0026	19.1	1.7	2	23	508	529	507	529	0.96
6	9	3.7e-09	3.3e-07	31.3	1.6	1	23	535	557	535	557	0.98
7	9	0.0031	0.28	12.7	0.6	3	23	565	585	563	585	0.97
8	9	8e-05	0.0072	17.7	1.5	1	23	591	613	591	613	0.99
9	9	0.025	2.2	9.8	0.8	1	23	619	643	619	643	0.95

Sequence Information

Coding Sequence: ATGAGTGTTGCGGTGGGTCGAGTCGGCAGCCGTGACACGACAACACCGTACGTCCTCTACAAAGATGGCGTGGAGCGAGCTCCCCCGGGCACGCAGTGGGGCGGCGGAGTGCTGGACGGCGGCTACCAACCCATGCAGCACCAGAGCCCCGGCGGGCCCTCACCGCAACCCGAGCCCCAGCTCGCGTCGCCCGCGCCTTCGCCCTACCCCCCTGCTCCACCGCCCCCAGACCCCACCGGCGCCGCAGAGGACGCCGCCCAGCAACTCGCTCAACAACAGGCACAGCAACAAGCGCAACAACAACAGCAACAACAGCAGCAACAGCAACAAACTTCTCCCGAACACATGCAAGTGGAGCAACAGCTCCAGAGCCAATCCCAGCCACAGCCTCCCTCACAGGATCACCTGGACCGCACGCCGTGCTTCGTGCCGCAACCGGACCTGCAGCAGCAGTACACGCCGTACTTCAAGGAGGCGCGACCAACGAGCCACATGCTCGGCACGGGCGGCTTCCCGCTCCACTACCTGAAACAGAACGGTGGTGTACTGTCCCTGGAAGGCCCTCTAGACCAGTACGCCGCGCCCGACCTTCGCCACTTGCCCGATATTGTGCAGCCTGAGCCACCGAAGCCGAGGAAGCACAACCCGAACTCAGAGCTCCGCCTGTTCAAGTGCCTGACGTGCGGCAAAGACTTCAAGCAGAAGTCGACGCTGCTGCAGCACGAGCGCATCCACACGGACTCGCGGCCGTACGGGTGTCCGGAGTGCGGCAAGCGGTTCCGGCAGCAGTCGCACCTGACGCAGCACCTGCGCATCCACGCGAACGAGAAGCCGTACGCGTGCGTGTACTGCCCGCGCTCGTTCCGGCAGCGCGCCATCCTCAACCAGCACCTGCGCATCCATTCCGGTGAGAAGCCATATACGTGCGGCGAGTGCGGCAAACATTTCCGCCAGAAGGCCATCCTGAACCAGCACGTCCGCACACACCAAGGCGAGCGCTATTCACACATATATACCCCCCGccccgcgcgcgccgcccgcacTGACCCCGGTCACTGCCGCCGGCGCCCGCGCTCCCCGCCGCCCCCGCACCGTCGATTCGGTCTCGCATCCATTGGCCTTCCTATCAGACAAATTCTCGGTTCCCTCGTCGCCCGTGTAACGCAGGGCGCCCGCGAGACGCGGAACCGACCGCCGGACGTTCCCGTAACCGTTCCCAATGTTTCACCGCATCTCATCTTCAAGAATGGAACGACGCCGACGCTATGGCCCCAGGACGTGCCGTTCCCGGCCGATGAAAACAAGGAGGAGATCCAGTCAACGTTCGGCGACGCGGACGGACAGAATGGAGACCAGCGCGGCTCCTGCTTCTCACCAGGTGACACGGCGCAGTACCCTGCTTATTTCAAAGATACGAAAGGTCTCAATCATTCAGTCTTCAGCTCGGGGCTATCTCTGCAGTATTTGAAAGGCGGCAAGCTACCAGACGTACTCGGAGGGCGGGCGATGCCTCTGTACGTGCGATGCCCGATTTGCCAAAAGGAGTTCAAACAAAAGTCAACGCTGCTACAACACGGGTGCATCCACATAGAGTCCCGTCCATACCCTTGTCCCGAGTGCGGTAAGCGCTTCCGACAGCAGTCGCATCTGACGCAGCATTTGCGCATCCACACCAATGAAAAGCCGTACGGCTGCGTGTACTGCCCACGCTTCTTCCGCCAGCGGACTATCCTCAACCAGCACTTGCGCATCCACACTGGGGAGAAGCCGTACAAGTGCACTCAGTGCGGCAAAGACTTCCGGCAGAAAGCCATCCTGGACCAACACACGCGGACGCACCAGGGCGACCGGCCCTTCTGCTGCCCCATGCCCAACTGCCGGCGGCGCTTCGCCACGGAGCCCGAGGTGAAAAAGCACATCGACAACCACATGAACCCGCACGCGGCCAAGGCGCGGCGCGCCGATGCCAACAAGACGCCGCGGCcgctgccgcccgccgccgccgtcgtgAAGCCCGAGCTTTACTTCCCGCAGTGCTACGCGCCACCTTTCCAGCAGTTCGGCGGCGCCGGCGAGTTCAAGCCGGCGGTGGGTCCGGGCGCGCCCGTGGCCTGCCTGCCGGCGCAGTga
Protein Sequence: MSVAVGRVGSRDTTTPYVLYKDGVERAPPGTQWGGGVLDGGYQPMQHQSPGGPSPQPEPQLASPAPSPYPPAPPPPDPTGAAEDAAQQLAQQQAQQQAQQQQQQQQQQQQTSPEHMQVEQQLQSQSQPQPPSQDHLDRTPCFVPQPDLQQQYTPYFKEARPTSHMLGTGGFPLHYLKQNGGVLSLEGPLDQYAAPDLRHLPDIVQPEPPKPRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCPRSFRQRAILNQHLRIHSGEKPYTCGECGKHFRQKAILNQHVRTHQGERYSHIYTPRPARAARTDPGHCRRRPRSPPPPHRRFGLASIGLPIRQILGSLVARVTQGARETRNRPPDVPVTVPNVSPHLIFKNGTTPTLWPQDVPFPADENKEEIQSTFGDADGQNGDQRGSCFSPGDTAQYPAYFKDTKGLNHSVFSSGLSLQYLKGGKLPDVLGGRAMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKARRADANKTPRPLPPAAAVVKPELYFPQCYAPPFQQFGGAGEFKPAVGPGAPVACLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00428362;
90% Identity: iTF_00888518;
80% Identity: iTF_00040104;