Aseg005465.1
Basic Information
- Insect
- Agrotis segetum
- Gene Symbol
- -
- Assembly
- GCA_036375495.1
- Location
- JAQSVV010000037.1:5420-12312[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.19 17 7.1 0.1 1 23 87 110 87 110 0.91 2 19 0.094 8.5 8.0 0.1 2 23 137 159 136 159 0.96 3 19 0.044 4 9.1 0.2 2 23 182 203 181 203 0.96 4 19 0.0034 0.31 12.5 0.2 1 23 207 229 207 229 0.98 5 19 4.9 4.4e+02 2.6 2.0 1 14 234 247 234 257 0.87 6 19 0.00029 0.026 15.9 2.1 1 23 264 287 264 287 0.96 7 19 0.00084 0.076 14.5 1.2 1 23 294 317 294 317 0.94 8 19 1.9e-05 0.0017 19.7 4.7 1 23 323 345 323 345 0.97 9 19 1.2e-05 0.0011 20.3 0.4 1 23 351 373 351 373 0.98 10 19 0.0049 0.44 12.0 0.1 1 16 379 394 379 395 0.96 11 19 0.51 46 5.7 0.1 2 23 546 568 545 568 0.94 12 19 0.44 40 5.9 3.1 2 23 591 612 590 612 0.92 13 19 0.02 1.8 10.1 0.0 1 23 616 638 616 638 0.95 14 19 0.0098 0.88 11.1 3.0 1 23 643 666 643 666 0.97 15 19 0.14 12 7.5 3.3 2 23 672 694 671 694 0.94 16 19 0.00029 0.026 15.9 0.4 2 23 703 725 702 725 0.96 17 19 3.8e-05 0.0034 18.7 0.9 1 23 731 753 731 753 0.99 18 19 0.014 1.3 10.6 1.9 1 23 759 781 759 781 0.98 19 19 2.7e-05 0.0024 19.2 0.6 1 23 787 810 787 810 0.98
Sequence Information
- Coding Sequence
- ATGTCCACATTGCGATCAGAAATTCGCTTCTTATATACAGAGAAACAAGCATATGGTCTGGGCTGTAAAATCAGAAAAGCAATCAAATCTCCACGATCTGCAAAAGTAATCCACAGTCAGGCGTTCAAAGAAGACTCTTTAGAGGTTCAATCTCCTAAAAAAATGGACACGACAGAGATTGACAAACATTTGCAGAATATTCGAACCATTCTCATTTATTCGAATTCTACtcctatcaaaaaaaaaacagcgcgTGGTTATTTGTGCGCTTTCTGCCCGGAGTACTTTGCTTTGCCGAAAGAACTCAAAGAACATACTCTAGAAAACCATGACAACGATACAAAAAGTAGTTTTATGAAAGGTAGTCGCCTCTTTGAATATGTCGTTAAACTTGATATCACTGGTCTAAAATGTGAGATATGCAACCAAGATATCGACAGTTTAGAAACACTGATGGATCATTTACAGTCTGTTCACGATCAAGTAATGCACAACGATATCAAAAATCATATATTGCCGTTCAAATTTGAAGGTAGCACGTTGCAGTGCGTCCTATGCCCAAATATCTACTACTACTTTAAAAATCTGCAGGAGCATATGACGGTGCACTACAGAAATTACATTTGTGAGATTTGTCAGGCACCTTTCCTCAATGAGAGTACCTACAGACGTCATATGGCCCGGCATAAAGAAGGAAAATTTGCTTGCAGGTTTTGTCGTAAAGTTTTTGCCACAAATGACAGAAAACTATGCCATGAGAAGAGCATACatactcatgataacaaacGGCATAAATGTCCTTATTGCAATAAGAAATTCGTTGGTTACAGTCAAAGGAATGCTCATATGGTCAAAGAGCATGGCGCGAAGCCTCTTGTCTTTCATTGTTTAGCCTGTGATAAGGAATTTAGTAGAAAAGAAGCTCTGAACCTTCATACGAAACTGGTTCATTTGCTTGAAAAGAAACACGAATGCCAGCACTGTGACAAGAAGTTTTCTAGAAAGAAAGATTTAGATGCTCACATGGTGAAACATACAGGACTCAAGCCATTTATTTGCAATATTTGTTTGAAGGGTTTCGGTAGGAAAGTTTATTTGAATCAGCATATGAGAGTACATATAGAGGACAGGAAGTATAGATGCGAGGAATGCGGTCTAGCGTTTGTACAGAAATCTAGTCTCGGCTGCCAAACAGAAATTAAATTAGAACCTCATGTAAGTAAAATATTAGACACACTCAGTGCACCGAGACCTGCAAATCGAGACAGCAAAGTTGATTGGACTGTGACGGTCGCTAAAAAAGgTCGAAGTGAAGCGACAGAACTTGCCAAGAAATTGCAATCCGAGATCAAAGAACGTCAGATTGCACAAGCAGAAACAGCACATACAAAATCAAAGAAAGATACTAGCAGAGGCAACTCTCAATCGAACACTAAAGAAGAAGGCAGTCAAATtagaaaaagagtaaaaaacaatATGACGAGGAATTGTTCAAACAACGTTATAATATTAGAGAGATTCTACTATGTAGCAATGCCACACCGATTCGTAAAACACGATGATAGTGACAAACTAGATTTCATGAAAGGACAGGTCGCCAAATCCTTCTTGGTCAAACTAGATATTACTGCACTGAAGTGTACTTTGTGCGACACAGATATAGATTCGGATGTGGACCTCATCCAACATCTTAGGGACGAACATGAAAAGCCAATGTTTACAGATATAAAGAATTATATCATACCATTCAAGTTCGAAGATTCTACACTGAAGTGCATTTTCTGTTCACGAATTTTCAATAGATTCAAAGTTTTACAAGAACACATGCATACTCACTACAGAAACTTTGTCTGTGACGTATGCGACGCTGGGTTTGTTAATGTAACAATGCTGATGGCGCACAGTGACAGTCATAAAGTAGGAATTTTCAAATGCAAACATTGCCCCGAAGAATTTGACACTCCAAATAAAAGGAAATACCATGAAAAGACTGTTCACTATTTATCTCTAAACAAATGTGGGTATTGTGATGAAAAGTTTATGTCGTATAGACATAAATGTGCTCATATGGCTGAACTTCATGGCGTTGTTTTAAATCAACCAAAAGAGTGTAAAGCGTGCGACAAAGTCTTCCCTTCTGAGCGTTCACTTCAACTTCACGTTAGGAGGTATCACTTATTGGAACGTAGTTACAAATGCACGGAATGTGAAAAGGAGTTCTTTGCCAAAGATACGTTAAGCAACCATATGATCACGCACACAGGGATCAAAAAGTTTTCCTGCGAAGTATGCTGCAAATCATACGGGCTGAAGAAAGGTTTGAGAGAGCACATGAGGATACATGAGAATGACAGGAGATTCAAGTGCGAGACATGTGATCAGGCGTTCGTTCAAAAGGCCAGTTGGAAGGGACATATGCGTTCTAAGCATGGAATTACAGTATGA
- Protein Sequence
- MSTLRSEIRFLYTEKQAYGLGCKIRKAIKSPRSAKVIHSQAFKEDSLEVQSPKKMDTTEIDKHLQNIRTILIYSNSTPIKKKTARGYLCAFCPEYFALPKELKEHTLENHDNDTKSSFMKGSRLFEYVVKLDITGLKCEICNQDIDSLETLMDHLQSVHDQVMHNDIKNHILPFKFEGSTLQCVLCPNIYYYFKNLQEHMTVHYRNYICEICQAPFLNESTYRRHMARHKEGKFACRFCRKVFATNDRKLCHEKSIHTHDNKRHKCPYCNKKFVGYSQRNAHMVKEHGAKPLVFHCLACDKEFSRKEALNLHTKLVHLLEKKHECQHCDKKFSRKKDLDAHMVKHTGLKPFICNICLKGFGRKVYLNQHMRVHIEDRKYRCEECGLAFVQKSSLGCQTEIKLEPHVSKILDTLSAPRPANRDSKVDWTVTVAKKGRSEATELAKKLQSEIKERQIAQAETAHTKSKKDTSRGNSQSNTKEEGSQIRKRVKNNMTRNCSNNVIILERFYYVAMPHRFVKHDDSDKLDFMKGQVAKSFLVKLDITALKCTLCDTDIDSDVDLIQHLRDEHEKPMFTDIKNYIIPFKFEDSTLKCIFCSRIFNRFKVLQEHMHTHYRNFVCDVCDAGFVNVTMLMAHSDSHKVGIFKCKHCPEEFDTPNKRKYHEKTVHYLSLNKCGYCDEKFMSYRHKCAHMAELHGVVLNQPKECKACDKVFPSERSLQLHVRRYHLLERSYKCTECEKEFFAKDTLSNHMITHTGIKKFSCEVCCKSYGLKKGLREHMRIHENDRRFKCETCDQAFVQKASWKGHMRSKHGITV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -