Basic Information

Insect: Agrotis segetum
Gene Symbol: Znf296_1
Assembly: GCA_036375495.1
Location: JAQSVV010000088.1:12988271-12995856[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00036 0.032 15.6 0.6 2 20 15 33 14 37 0.95

2 13 0.082 7.4 8.2 0.1 2 23 77 98 76 98 0.96

3 13 1.6 1.4e+02 4.1 1.0 2 21 105 124 104 125 0.92

4 13 1.5 1.3e+02 4.3 0.2 2 23 176 198 175 198 0.89

5 13 0.0079 0.71 11.4 0.3 1 20 203 222 203 224 0.92

6 13 2.9e-05 0.0026 19.1 0.8 1 23 232 255 232 255 0.98

7 13 1.6e-05 0.0014 19.9 2.6 1 23 276 298 276 298 0.99

8 13 3.5e-06 0.00032 21.9 3.6 1 23 305 327 305 327 0.99

9 13 1e-07 9e-06 26.8 2.3 3 23 341 361 339 361 0.96

10 13 2.3e-05 0.0021 19.4 3.2 1 23 367 389 367 389 0.99

11 13 2e-06 0.00018 22.7 2.6 2 23 396 417 395 417 0.96

12 13 1.2e-07 1.1e-05 26.6 1.4 1 23 423 445 423 445 0.99

13 13 0.0028 0.26 12.8 0.1 1 23 451 473 451 473 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00036	0.032	15.6	0.6	2	20	15	33	14	37	0.95
2	13	0.082	7.4	8.2	0.1	2	23	77	98	76	98	0.96
3	13	1.6	1.4e+02	4.1	1.0	2	21	105	124	104	125	0.92
4	13	1.5	1.3e+02	4.3	0.2	2	23	176	198	175	198	0.89
5	13	0.0079	0.71	11.4	0.3	1	20	203	222	203	224	0.92
6	13	2.9e-05	0.0026	19.1	0.8	1	23	232	255	232	255	0.98
7	13	1.6e-05	0.0014	19.9	2.6	1	23	276	298	276	298	0.99
8	13	3.5e-06	0.00032	21.9	3.6	1	23	305	327	305	327	0.99
9	13	1e-07	9e-06	26.8	2.3	3	23	341	361	339	361	0.96
10	13	2.3e-05	0.0021	19.4	3.2	1	23	367	389	367	389	0.99
11	13	2e-06	0.00018	22.7	2.6	2	23	396	417	395	417	0.96
12	13	1.2e-07	1.1e-05	26.6	1.4	1	23	423	445	423	445	0.99
13	13	0.0028	0.26	12.8	0.1	1	23	451	473	451	473	0.97

Sequence Information

Coding Sequence: ATGCATTCTTTAATAAttgagTGTGATGAAACCAACCGTACTTACTGCCCACTTTGCGGTACATGCTACAATGGTGCGGAGAACTTAACGAAACATATGTGGGAGAATCATGCAGACCTTATGGGCCCAAAAAAGAGAGGCAGACCCAAGAAGATGTTAACTAGTACTATTCTTAACAAGTTATCAGAAAATGGATTTTGCATAACATCAATGCCAGCTAAAAAGATTGAGTGCGCATTTTGCAAGCAACTTTTTGAAACCAAAGAAGAATTAGGATCACATGCTATAACTCATAAAGatACGAGAGTGCTACGTTGTGTGTTGTGCAAGAAAATATACCTCGATAAGAAAAATTTTGATCAACATATCTGTATTGAAGAGAAAGATGATACAAACAATGTAGAAAATgattcaGCTAATACAGAAACAAGGCAAGAAAAAAGGCCTCAAAACTTTCCATCAGAAATAACATTGCGAGAATTGCTTGACCCGAATCTGGATATGGACAACATCAACTTACTCATAGTGTGTAGTACTTGCAACTGCATATTGCAATCGGAAGGGGAGCTCATTAACCACCGGGATGCTGAGCACCCAGAACTATCTCACCGATGCAACCTCTGCACCAAGGTGTTTGCTTCATTGCGGTCAGCAGCACGCCATAGAAGCATTTGCAAgcaaattgaaagaaaatataaatgtaatacCTGTGGCTTGAAATTTGCTTATGAAATATCCTTAAATAAGCATATTCTACGATATCATGAAGGACAAAGCGTGTCGGTTAAATTTATTGATTCTAAAACCAAGCGAGAAGAGAGACAGTATCAGTGTGACATTTGTAATAGAATTTTCTGCAAGAGGGATTTACTAGTAAAACATACTAAAATACACATGCCAATCGAGAACTTCTACCAATGTGacgtttgtgaaaagaagtttcACAGAAGTGACAATCTccgTTCTCACAAACGAATTCATCAGCCGCAGCGCGAAAAGACTTCGTCTAGTAACTGCTTATGCCTTTACTGTGGCCGCAGTTTCTCTAACTCGTCGAACTTAATCGTTCACATGCGTCGCCACACCGGAGAGAAGCCCTACAAGTGTGATTTTTGTGGCAAAGGTTTTCCAAGATCTTCGGATCTTCAGTGTCACCGGAGGTCTCATACTGGAGAAAAACCATGCATATGCCGTGTTTGTGGTAAAGGTTTTTCGCGGAGCAATAAGTTGTCTCGACACATGCGAGTCCACACTGGCCAGCGTCCATACAAGTGTACGTACTGCGAGAAAGCGTTCTCGCAGAGCAACGATCTCAACCTGCACATCCGTCGACACACTGGCGACCGGCCTTATATTTGCGAAGTATGCGGCGACAGATTTATACAGGGTACCGCATTGCAGAATCATCGACGAGCTCATGATCATTTTCCTGCTCCTCCCACTACCGAGGCTCCTACCGAAGTACAAGCACTGAGTTTTACAGTCCAGAGCATAAGCCAGAATAATAGTCATTAA
Protein Sequence: MHSLIIECDETNRTYCPLCGTCYNGAENLTKHMWENHADLMGPKKRGRPKKMLTSTILNKLSENGFCITSMPAKKIECAFCKQLFETKEELGSHAITHKDTRVLRCVLCKKIYLDKKNFDQHICIEEKDDTNNVENDSANTETRQEKRPQNFPSEITLRELLDPNLDMDNINLLIVCSTCNCILQSEGELINHRDAEHPELSHRCNLCTKVFASLRSAARHRSICKQIERKYKCNTCGLKFAYEISLNKHILRYHEGQSVSVKFIDSKTKREERQYQCDICNRIFCKRDLLVKHTKIHMPIENFYQCDVCEKKFHRSDNLRSHKRIHQPQREKTSSSNCLCLYCGRSFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCICRVCGKGFSRSNKLSRHMRVHTGQRPYKCTYCEKAFSQSNDLNLHIRRHTGDRPYICEVCGDRFIQGTALQNHRRAHDHFPAPPTTEAPTEVQALSFTVQSISQNNSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01526338;
90% Identity: iTF_00449489;
80% Identity: -