Aseg005155.1
Basic Information
- Insect
- Agrotis segetum
- Gene Symbol
- -
- Assembly
- GCA_036375495.1
- Location
- JAQSVV010000033.1:1487117-1491617[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.7e-06 0.00051 21.3 0.5 1 23 17 39 17 39 0.95 2 14 0.00062 0.055 14.9 2.1 1 23 60 82 60 82 0.97 3 14 0.0044 0.39 12.2 0.1 1 23 105 127 105 127 0.94 4 14 0.058 5.2 8.7 0.2 5 23 135 154 132 154 0.94 5 14 0.00035 0.032 15.6 0.2 2 23 245 266 244 266 0.98 6 14 0.00012 0.011 17.1 0.7 1 23 272 294 272 294 0.97 7 14 0.078 7 8.3 3.0 1 12 301 312 301 323 0.85 8 14 1.8e-06 0.00017 22.8 0.8 1 23 329 351 329 351 0.98 9 14 2.5e-05 0.0022 19.3 0.1 1 23 357 379 357 379 0.96 10 14 2.2e-06 0.0002 22.6 4.0 1 23 385 407 385 407 0.98 11 14 2.1e-05 0.0019 19.5 0.3 2 23 414 436 413 436 0.96 12 14 0.0044 0.4 12.2 3.0 2 23 453 474 452 474 0.96 13 14 0.006 0.54 11.8 0.5 2 20 478 496 477 498 0.94 14 14 0.11 10 7.8 0.7 2 23 502 523 501 523 0.88
Sequence Information
- Coding Sequence
- atgaagccaTGCCCGGAGTTGCTCGTGAAACTGAAGAAGATAGATGTACATGTGTGTGATAAATGCCCAAAAGTCTTCCCAAACCCAAGTGACCTCTTAAAGCATAAGGCTTATCATGATGAATATTTCCTATCACATGTTGTCAGTGCCTATGTATCCTTGGAAAAGGCTAAAATATTCACATGCGACAAATGTACTCGAAGCTTTGACAATAAAACAGATTTTGTGCTCCATAAGGTTACGCATATACAAGATTATgtgagaaataaaagaaatagaaacaTATGGCAGAATCCTGATATTGCGAAACCTTACAAATGCCCAGACTGCGACGTTTCTTACGCTGCAAAAACTACTCTTGATGCCCATTCTTTTGTTCACTTGCCATTCCCTCACATCTGTGAGTGTGGCATCGGATATTACAAGCAACAAGATTTGAACGCCCACATTAAATTAGTACATGGAACAAAAATTGATGAAGAGGATATTTTGCAACCAAAAGAGGAAACAGTTATTCGCCAACAAAATTCCGCAGTTAAACGTTCAAGTGAGCCTAAATCTAAATCCAAGAAAAGTCCAACAGCTAAAGGAgctgtaaaaaagaaaaaacgtagAACCAACCAGTGGGAACTTAATCTCCCAGATGAAGTTCTGAAGGGCTATATACCAAAAAGTGAATCGGACGTACCAGATCCCGATGTTAAATTCAGAGTAACTTCTGATAAACGGGTCAAATGTCCCGAGTGTAAGAAATTATTTAGAGACAAAAGAGCTGCTATTGTACATTACCGTGTCCACTCGGGTGAACGTCCATTCGCTTGTCATCTATGTCCGAAGACGTTCGTGCAGGGAGGCACGCTCAAATTACACCTAGAGAGGCACGCATGTACGGAAAAGATCTATTCGTGCAAATATTGCCCGAAAAGTTTTACCTTTGCAATCTATAGGGATTGTCATGAAAGAATACACAGTTCAGTTAAGTCTTACGAGTGTCCATTCTGTGGGAAAGGATTCCACGATCCGTCCGCAATGACGCGTCACAAACGAATACACACAGGAGATAAACGATACGCATGCCCGTATTGTCCTAAGGCTTACACTGACGTCAGTGCTCTCAGAGCACATAACTTACGCCACGAGAATAAAAAACAGTTTCCGTGTCAAAATTGTGATAAGAGATTCTATAATCGGACTCTTTTAAAACATCACATGCGAGTACACACTCTTGAAAAAACCGTTGTTTGTGATTATTGCAAAAAATGGTTTAGTTCTAAACCCAATTTAATAAGCCATATGCGGCGCGCGCATATTAGTGTGGTTataaaaacacataaaattGGACtgtcaaaaaaagtaaagtgtAGTTTTTGCTCTAAATTCTACACAAGGAAAAGTTTATGGAAACATATTAGAAAGTTCCACCCAGGAATACGATGTGAGAAGTGCTCACTGTATTTTAAAACTGAGGGCCACTTCAAAGCACACTTACTAGGTAATAAGGTACAATGTGAAATATGTGATATGTCGTTTACTTGTGAAAATATGATGGATAAACATTTAGAAGTTCATTATGCCAAAAGTGTAGAAACAATCAAAAGAGATTCAGAAAACCTAAACGAAATTTAG
- Protein Sequence
- MKPCPELLVKLKKIDVHVCDKCPKVFPNPSDLLKHKAYHDEYFLSHVVSAYVSLEKAKIFTCDKCTRSFDNKTDFVLHKVTHIQDYVRNKRNRNIWQNPDIAKPYKCPDCDVSYAAKTTLDAHSFVHLPFPHICECGIGYYKQQDLNAHIKLVHGTKIDEEDILQPKEETVIRQQNSAVKRSSEPKSKSKKSPTAKGAVKKKKRRTNQWELNLPDEVLKGYIPKSESDVPDPDVKFRVTSDKRVKCPECKKLFRDKRAAIVHYRVHSGERPFACHLCPKTFVQGGTLKLHLERHACTEKIYSCKYCPKSFTFAIYRDCHERIHSSVKSYECPFCGKGFHDPSAMTRHKRIHTGDKRYACPYCPKAYTDVSALRAHNLRHENKKQFPCQNCDKRFYNRTLLKHHMRVHTLEKTVVCDYCKKWFSSKPNLISHMRRAHISVVIKTHKIGLSKKVKCSFCSKFYTRKSLWKHIRKFHPGIRCEKCSLYFKTEGHFKAHLLGNKVQCEICDMSFTCENMMDKHLEVHYAKSVETIKRDSENLNEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -