Aseg002572.1
Basic Information
- Insect
- Agrotis segetum
- Gene Symbol
- -
- Assembly
- GCA_036375495.1
- Location
- JAQSVV010000016.1:4324890-4325465[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-07 0.00018 22.1 0.0 2 41 22 62 21 64 0.93 2 2 4.8 5.2e+03 -1.8 0.0 22 29 85 92 85 96 0.87
Sequence Information
- Coding Sequence
- ATGGGAAAGCCTATGAAACGAAATCGCAGAGTCCTCGGGTCCCGTTCCTATAAAAATTATTCAGAGGAGATGTTGCAACTCGCGGTAGAAAATGTTAAAGAACATAGGATGTCCTCGAGATCAGCAGAAAAAATGTTTGGTATACCTAGGCGCACCATCATAAACAAAGTGAAAGAGAACCATAACAAAAATGTTGGAACTCCTACTCGGCTCTCTTTGGAAGAGGAAAAGAATGTTGTTCAAGCATTGATTGCAGCCGGTGAATATGGTTGCCCACTAACGAAACTTGATTTACGATTGACtgtttttgaatatttaaagaaaaataatcgtGAAAATTTATTTGATGGAAAACCACCTGGCAAGGACTGGGTTGCCAGTTTTCTCGACCGACATGCAGATGAACTTTCTGTTAGAAGTACGCAAAATATCAAAACAGCACGGGCTCAAAAAAGTGCACATGATTTTTTAACATATTTTCAGAACTTGGAAGAAACTGTAAGAGATGTTCCTCCATCTAACATTTTAAATCTAGATGAAACTAATCTAAGTGACGACCCAGGTAATTCTAAGTGA
- Protein Sequence
- MGKPMKRNRRVLGSRSYKNYSEEMLQLAVENVKEHRMSSRSAEKMFGIPRRTIINKVKENHNKNVGTPTRLSLEEEKNVVQALIAAGEYGCPLTKLDLRLTVFEYLKKNNRENLFDGKPPGKDWVASFLDRHADELSVRSTQNIKTARAQKSAHDFLTYFQNLEETVRDVPPSNILNLDETNLSDDPGNSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00888201; iTF_00186119; iTF_00783414;
- 90% Identity
- iTF_00888201;
- 80% Identity
- -