Aput009750.1
Basic Information
- Insect
- Agrotis puta
- Gene Symbol
- -
- Assembly
- GCA_943137145.2
- Location
- CALPBO020000388.1:1204013-1215525[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.48 32 5.5 0.5 2 23 466 487 465 487 0.95 2 12 0.083 5.6 7.9 3.3 1 23 494 517 494 517 0.93 3 12 1.4 97 4.0 2.7 1 23 521 543 521 543 0.96 4 12 1.6e-05 0.0011 19.6 2.4 1 23 548 571 548 571 0.96 5 12 0.22 14 6.6 0.2 2 23 580 602 579 602 0.95 6 12 0.021 1.4 9.8 0.1 2 20 613 631 613 633 0.94 7 12 0.0017 0.11 13.2 0.6 3 23 643 663 643 663 0.99 8 12 0.79 53 4.8 0.1 3 23 679 700 678 700 0.95 9 12 0.00073 0.049 14.4 3.1 1 23 717 739 717 739 0.99 10 12 4.8e-06 0.00032 21.2 0.6 1 23 745 767 745 767 0.99 11 12 0.0007 0.047 14.4 3.7 1 23 773 795 773 795 0.98 12 12 0.0014 0.096 13.5 2.8 1 23 801 824 801 824 0.94
Sequence Information
- Coding Sequence
- ATGGATGAATTTAAGTATTGCCGAGTGTGTCTTGTGACGGATGTGAAGATGTATAGCTTGGAAACGAAGTCTCCCGACTCCGTTGGCGCATTTTATTCAGATCTGGTGCAGGCTCAGATAGCTGATGAGGATCAACATGTTTGTTTTGAATGTGCCAGCCTCCTCTACAAGTATCAAGAGTTCAAATCAAAGTGTCTCAGAGCTCACTACATCTTATCTGGAATCAAACTTGTTTCATCTGAGATAACAAGGGACACAATCGAAAATGTGGACCGAAAAATGAATAATTTGGAATCAACATTGAAAATAAATCCTGTAGTTGTTTTCTATGATGAACGAAAAAATAATGCAGAAACGAATGAATTAAATACAGTTAAAGACAAAGAACAAAATGATTCTGAAATCAATATTAAAACTGAAGAAGAAAAATACATAGTAATAGAACATTACAATAACTTAGGTGTAGATTGTAAATATGATTATAATGATGATAGTACTGAAGTCTACTACACTGATTGTATAGAAGAGTCATTCTCTGAAACAGCAGCACAATCAGAATGGAAAATTAATCATGATGATAAACACAACAGTTATAAAAGAAAACTTGTCAAGAATGAATATGAGGATGATTATAATCTAAGTGATGAAATGGAAGAGTCAGTTCCAGAAATAACAGCACAACCAAAAATTAAAAAAAGAAAAGTAATGAATACTAAGAGTGAAGATAATTTCAATTTAAGTGACGACATGTCAAAGTCAGTTACAAAAATAGCAGTACAACCAACAAGGAGAAGCAAACAACCAAACATTATAAAAAAAAGAACAGTTCTGAAGGTTATGGGCGAGGATGACTTCAAATTGCTTGAAGAAATGGAAGAGTCGGTTCCAGAATCAGAAACACAATCAGTAAGGAGAAGTATTCGTAACAAACAATCAAATGTTAATAAAAGTGATTTCTTGAAAAGTAAACAACCAAAAACTAATAACAGAAACACGATTAAAACTGAGGAAGAGGATGTTTTCATTATCAGTGATTCAATGGAAGAGTCGGACACACTGTTAGTTGAAAAAACAACAAAACAGAAAAGTAGACAACTGAAGAAACAAAAAACTAAAAAAAGTAAGGTTATTAAGAATGAGAACACTGATGATTCCAATTTCAGTGAACCTGACTCAGAGATGGAAGAGTCAGACCGAGAATCAGAAGCAAACACAAAACAGAAACGTAAACAAACAAAACGTAAAAAAGTTACTAATGACCCTAATAAAAAGAACAGTGGTCCCGACTACAGTTTCTTTGATGACTATGGAACGGTTGAGTTTATGACCACTGAAGAAGCCAGAAAGGAGCTACTGTTAAGAAAACAGTCCAAAAACTATAAAACGTCAGCATTAAAGTGTGACATATGTTATACAGGATTTGAATTGAAATTGACTTACGACAAACATCTAGAGAGACATACCCCTGAAAATGGAGACTTTGAATGTGACGTCTGCTACTTAAGATTTCCTCTGAAGGTATACTTGCGTAAACATAAAATGTTCTGTCATCGGAAAAAGTTTAGCTGTAAACTATGCCCATTTGTTTGTTATAAAACGGACAAAGCAAGAAATCATGTGAGTATGCATCAAGGATTGAAATATCTATGTAAACATTGTGGAGAGGAGTTCAGCATGCCGAGTACTTTACGGATGCATTACCGTACAAAGCATATAGATGAATCATTAAATGAAAGTGTTTGTCAGTTTTGCGGAGACATATTTGGCACACTGAAGGGACTGCGCTCACATACCATTCGACTGCATAAGCAGGATACAAATGACAGGCTTGGTCCTGAGTGTGGTGACTGTGGTGTGCACTTCACATCTGAAATGGCGTGGAAGCGACATCTAGTGCTGTCATCTAGACATAAAGTCAGTATCGGTTGCAAATTCTGTGGGGACACATTCTCGAAAGAGGTTGAGCTTAAGGCTCACTTGAAAATGCACACAAGGCAGAGCAACACATATAATAATACCATAGTACCCGCCGCATGTCCTATCTGTGAGAAATGGTTGGAAACCCGCGAGGAGTACAAGGATCACGTGACGACCGAGCACCCGAACAGCGACGAGGCGGCGAAGTTCCATGGAGCTCACGAGAAGCCTTATGTGTGCGAACATTGTGGAGACGCGTTTAAGAATAATTGTGTCTTACAAGAACACCAACGGAAGCACACGGGCGAGCGTCCGTTCAAATGCTCGGAGTGTGACAAATCGTTCCGCACGGGGACCGCGCTCGCTGTACACACACAGACACACAGCGGACTGAGGCCTCATAAGTGCGAGATATGCGACCGTGCGTTTACGTTCAAGTGTATCCTTGCCAGACATATGAAGATTCATCTCAACATTCGTCCATACACATGCACTATCTGTAACAAAAAGTTTATCAACGCATGCGACGTGAAGTGGCACACTATACATGTACACGACAAGGTACCCAGGCCTAAAAGAAAAACCGAAAAGAAGAAAATTAAAAGGATTAAAAGTGAAGAAAATGAGTGA
- Protein Sequence
- MDEFKYCRVCLVTDVKMYSLETKSPDSVGAFYSDLVQAQIADEDQHVCFECASLLYKYQEFKSKCLRAHYILSGIKLVSSEITRDTIENVDRKMNNLESTLKINPVVVFYDERKNNAETNELNTVKDKEQNDSEINIKTEEEKYIVIEHYNNLGVDCKYDYNDDSTEVYYTDCIEESFSETAAQSEWKINHDDKHNSYKRKLVKNEYEDDYNLSDEMEESVPEITAQPKIKKRKVMNTKSEDNFNLSDDMSKSVTKIAVQPTRRSKQPNIIKKRTVLKVMGEDDFKLLEEMEESVPESETQSVRRSIRNKQSNVNKSDFLKSKQPKTNNRNTIKTEEEDVFIISDSMEESDTLLVEKTTKQKSRQLKKQKTKKSKVIKNENTDDSNFSEPDSEMEESDRESEANTKQKRKQTKRKKVTNDPNKKNSGPDYSFFDDYGTVEFMTTEEARKELLLRKQSKNYKTSALKCDICYTGFELKLTYDKHLERHTPENGDFECDVCYLRFPLKVYLRKHKMFCHRKKFSCKLCPFVCYKTDKARNHVSMHQGLKYLCKHCGEEFSMPSTLRMHYRTKHIDESLNESVCQFCGDIFGTLKGLRSHTIRLHKQDTNDRLGPECGDCGVHFTSEMAWKRHLVLSSRHKVSIGCKFCGDTFSKEVELKAHLKMHTRQSNTYNNTIVPAACPICEKWLETREEYKDHVTTEHPNSDEAAKFHGAHEKPYVCEHCGDAFKNNCVLQEHQRKHTGERPFKCSECDKSFRTGTALAVHTQTHSGLRPHKCEICDRAFTFKCILARHMKIHLNIRPYTCTICNKKFINACDVKWHTIHVHDKVPRPKRKTEKKKIKRIKSEENE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041261;
- 90% Identity
- -
- 80% Identity
- -