Aput011641.1
Basic Information
- Insect
- Agrotis puta
- Gene Symbol
- -
- Assembly
- GCA_943137145.2
- Location
- CALPBO020000483.1:262135-278160[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.17 11 6.9 1.2 1 23 305 327 305 327 0.98 2 14 2 1.4e+02 3.5 0.9 1 20 334 353 334 356 0.82 3 14 0.00012 0.0079 16.9 2.3 2 23 389 411 389 411 0.97 4 14 5.5e-06 0.00037 21.1 0.3 1 23 420 442 420 442 0.98 5 14 0.0022 0.15 12.9 1.9 1 23 447 469 447 469 0.98 6 14 0.0045 0.3 11.9 1.7 1 21 478 498 478 503 0.93 7 14 0.0045 0.3 11.9 1.7 1 21 530 550 530 555 0.93 8 14 0.0045 0.3 11.9 1.7 1 21 582 602 582 607 0.93 9 14 0.0045 0.3 11.9 1.7 1 21 634 654 634 659 0.93 10 14 0.0045 0.3 11.9 1.7 1 21 687 707 687 712 0.93 11 14 0.0045 0.3 11.9 1.7 1 21 739 759 739 764 0.93 12 14 5e-05 0.0033 18.1 0.7 1 23 769 792 769 792 0.97 13 14 0.00013 0.0089 16.7 0.9 1 23 798 820 798 820 0.98 14 14 1.2e-05 0.00082 20.0 1.2 2 21 830 849 830 850 0.95
Sequence Information
- Coding Sequence
- ATGTCTTCATTTCTATGTTTTATTTGCCATAACACTGTCAACTCGGATACCAATGAGGAGACGCGGGATAAATACAGGGAACTAGTTGGCATGAATCTCTGTCCCGACTCTCAATTATGTTACATTTGCTGCCACATGGTAAATAAACTGTGGTTGTTTAAATCTATATGTTTAAAAAGAAGCTTGGAATATCCCGTATTATTTAGCGAAAAAGGAACAATCAACCTACAATACAATGAATTAGAATCTATAATTATTTGTACCGAAGAAAATTGTCTAACAACATCATTATCACAACTCTTCGTTGATAACAGAGATCAGAGTATCAATAGTAACGATTACACGAAATTAGAAGAGAGCCGCGATGATTTTGATGATTATTTTCGTGATAACACAGTTAAAGATGCTGTAGAAATTGAAATTGAGAGAATTGAGGAATTTGGGAACAGTGATGGACAGTTTTTGAAAAGTGATGAACAGTTTGTGAATAATGATGGAGAAATTGTGAATAGTGATGAACAATTTGTGAATAGTGATGAACAATTTGTGAATAGTGATGAACAATTTGTAAATAATGATGATAGCATTCACAATGATGACTTGCACCATTCTGAGGACGAAAACACGTTTGATTATAAATCAAAGAAAGATCAAGTGAGCGATACGGAATCTATAGAACAAAGTGGGGAAGAAAATCGAATAAATTATGAGTTTTATGAAGAGGAAAGAAATGTCTGTTTAGATGAAATTAGAAATGAAGGGAAAGATGAAACTACTGCGGATTTAGAAACTTCAAAGAAAAAAAAATCAAAAAAGAGTAAAAAAGACTTTGAGAAGATAATACTGTCTATAGAAGAACAGAAAGCAGAATTAGAAGCGCAGAGAAAGAGTAAGAAGTATTTAGAAGCTGAGTTTAAATGTTATAATTGCGCTTTGGGATTTCTGTTCAAAGATACGTATCAAGCACATATGATGAGGCATGAAGAGTCGAATGGCGAACACGTGTGCACGCTATGCTCGCTTCGCTTCGCTTCGAGCGCCGTGCTCCGGTGTCACGCCGCGCTGCACGGAGTTCGCTATCGCTGCTCGCTCTGCTCCGAGCTCGTGCGAGCGAGACAGACGCATCGACACGCTGCTTGCTGTCGGCAACTGCCACCTAAGAATACCTGTCATGAATGTGGTGCGGTTTTCCAGCACGCCAGCGGCTTACAACAGCATCTCAAACGGTTTCATATGTCAAAAACAAGTAATAGAACATATTCATGCAGTGTCTGCGGCAAAAGTTATAATAACCAAGCAGCTGTCAGAACGCATATGATAAAACACATACACCGCAAATTCAGCTGCGACCAGTGCTCCTCCATATTTAGCAGCCCCTACACGCTGTCACAGCATAAGAAGAAGCACACTGTGTCAGAACAAGCATCTGAACATTACTGCAACACCTGTGGCGTGGGGTATACCAGCAGGAAGAGCTTGTTGGCGCACCACAGACAATCTGCCAGCCACCAACAGAGAGCCTGCGACCAGTGGCCCAACACGCTGTCGCAGCATAAGAAGCACACTGTGTCAGAACAAGCATCTGAACATTACTGCAACACCTGTGGCGTGGGGTATACCAGCAGGAAGAGCTTGTTGGCGCACCACAGACAATCTGCCAGCCACCAACAGAGAGCCTGCGACCAGTATCCCTTCACGCTGTCGCAGCATAAGAAGCACACTGTGTCAGAACAAGCATCTGAACATTACTGCAACACCTGTGGCGTGGGGTATACCAGCAGGAAGAGCTTGTTGGCGCACCACAGACAATCTGCCAGCCACCAGCAGAGAGCCTGCGACCAGTACCCCCACACGCTGTCGCAGCATAAGAAGCACACTGTGTCAGAACAAGCATCTGAACATTACTGCAACACCTGTGGCGTGGGGTATACCAGCAGGAAGAGCTTGTTGGCGCACCACAGACAATCTGCCAGCCACCAACAGAGAGCCTGCGACCAGTGCCCCTACACGCTGTCGCAGCACAAGAAGAAGCACAATGAGTCAGAACAAGCATCTGAACATTACTGCAACACCTGTGGCGTGGGGTATACCAGTAGGAAGAGCTTGTTGGCGCACCACAGACAATCTGCCAGTCACCAACAGAGAGCCTGCGACCAGTATCCCTTCACGCTGTCGCAGCATAAGAAGCACACTGTGTCAGAGCAAGCATCTGAACATTACTGCAACACATGTGGCGTGGGGTATACCAGCAGGAAGAGCTTGTTGGCGCACCACAGACAATCTGCCAGCCACCAGCAGAGAGCATTCGACTGCCCGATCTGCAACCGATCTTGCCCGAACGAGCGGTCGTTGACCTCTCACATATCTACAGTTCATTCGGCGACGAAGCCGTTTCAATGTGCGACTTGCGACGCTCGTTACAGTAGTCGCAAGTCGCTCACAAGACATGAGCGTGGACATGTCGCTCCTCCACAGATTAAAGTGGCTGTGTGCCATCTTTGTGGCAGGAGTTTTAAGGGTAAAAGTAAACTGAACAGGCATTTACGGGAAGTTTGCGAAAAAGATAAGCTTGAGGAAGAATTATCATCATATTATGAACAACATATTTTATAA
- Protein Sequence
- MSSFLCFICHNTVNSDTNEETRDKYRELVGMNLCPDSQLCYICCHMVNKLWLFKSICLKRSLEYPVLFSEKGTINLQYNELESIIICTEENCLTTSLSQLFVDNRDQSINSNDYTKLEESRDDFDDYFRDNTVKDAVEIEIERIEEFGNSDGQFLKSDEQFVNNDGEIVNSDEQFVNSDEQFVNSDEQFVNNDDSIHNDDLHHSEDENTFDYKSKKDQVSDTESIEQSGEENRINYEFYEEERNVCLDEIRNEGKDETTADLETSKKKKSKKSKKDFEKIILSIEEQKAELEAQRKSKKYLEAEFKCYNCALGFLFKDTYQAHMMRHEESNGEHVCTLCSLRFASSAVLRCHAALHGVRYRCSLCSELVRARQTHRHAACCRQLPPKNTCHECGAVFQHASGLQQHLKRFHMSKTSNRTYSCSVCGKSYNNQAAVRTHMIKHIHRKFSCDQCSSIFSSPYTLSQHKKKHTVSEQASEHYCNTCGVGYTSRKSLLAHHRQSASHQQRACDQWPNTLSQHKKHTVSEQASEHYCNTCGVGYTSRKSLLAHHRQSASHQQRACDQYPFTLSQHKKHTVSEQASEHYCNTCGVGYTSRKSLLAHHRQSASHQQRACDQYPHTLSQHKKHTVSEQASEHYCNTCGVGYTSRKSLLAHHRQSASHQQRACDQCPYTLSQHKKKHNESEQASEHYCNTCGVGYTSRKSLLAHHRQSASHQQRACDQYPFTLSQHKKHTVSEQASEHYCNTCGVGYTSRKSLLAHHRQSASHQQRAFDCPICNRSCPNERSLTSHISTVHSATKPFQCATCDARYSSRKSLTRHERGHVAPPQIKVAVCHLCGRSFKGKSKLNRHLREVCEKDKLEEELSSYYEQHIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -