Aput009401.1
Basic Information
- Insect
- Agrotis puta
- Gene Symbol
- -
- Assembly
- GCA_943137145.2
- Location
- CALPBO020000370.1:40428-50318[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0005 0.033 14.9 1.2 1 23 268 290 268 290 0.98 2 12 0.00031 0.02 15.6 1.1 2 23 298 319 297 319 0.94 3 12 0.24 16 6.4 0.3 1 23 323 345 323 345 0.94 4 12 4.2e-05 0.0028 18.3 1.6 1 23 350 373 350 373 0.97 5 12 0.0011 0.074 13.8 0.2 1 23 377 400 377 400 0.94 6 12 0.018 1.2 10.0 0.0 2 20 417 435 417 437 0.93 7 12 0.0034 0.23 12.3 0.5 3 23 451 472 451 472 0.97 8 12 0.00097 0.065 14.0 0.6 2 23 491 513 491 513 0.97 9 12 2.4e-05 0.0016 19.0 0.7 1 23 524 546 524 546 0.97 10 12 3.6e-05 0.0024 18.5 1.7 1 23 552 574 552 574 0.98 11 12 5.1e-05 0.0034 18.0 0.7 1 23 580 602 580 602 0.98 12 12 3.5e-06 0.00024 21.7 0.4 1 23 608 631 608 631 0.98
Sequence Information
- Coding Sequence
- ATGGAGCCAGAACTTGTGAAAGTGTGTCGTATTTGTTCAATAATGGACGTTAAATTGCACGACTTGCGATCATACCCATTAGAATATTATTATGAGTCTGTAATTGGTACCAATCCCCAGTACAATAACCTGCCACCATATGCTTGTTATGAGTGTGCGGCAATGGTGAGGAAATTTTATTTCTTCAGACAGAAGTGTCTTCGGAGCCAGGCAGTCCTTTATGGTGCAAAAGATTCTTTTGGCAAGATACAATCTGAAAAGGTAAAATTAATAGATCGCAAAGGTATTCATATAGTATCTAATCTGAAGATTGTCAACTTACCAAACATAGACATAGATCTGGCCCAAGAACCTAAAACAAATGTAGAAGTGAAGCTTGGCAGCTATGAAGATGTTGATGACAAGATTAAATTTGATCATAACTATGCTTCCTTGCAATCAATGGATGCCGGACTCTGTAGTGATGATGATGAAACACTGTTACTTTATGTCGAGAAGGAAAGCCAAAATAATGATTCAGATGATGAAAAGGTGAACTTGAAAGAAGAGAGTGAAGGTCTTGAAATTGCTGTCGGTACAGAAGACCCTGGATTTGTAATTGAAGTACCTACAGTGTTAGAGACGAAAAAGAAACGCCGGTTGAAAAAAAATGGGTCGAGTTCGAACTTACGCCCAAGGGTTGCTGCTGATGGGGCATGGGACGATTTTGCGCAGTACATCGATGTTATTACGTTGACGTTGGAAGAGCAAAAAGAAGAAATTCAGAAGCGAAAGGAGACATCCAACTATATGAACTCGCCATTCCAGTGTAATCTGTGCTTTAAAGGGTTCATTGACAATGATGCCTGGAATCACCATGTCAGCAAACATGCTGTGACTGCAGGTAGCATAGAATGTGAAGTTTGTAAGTTTAGATTTAAAACGAAGAGTGCCTATCAGAAACACGCGTCTAACCACGAGACAAAATACGCCTGCAAATCCTGTCCTTACGTATCCAGTAACACGACTCAAGCTAAACAGCATCAAGGGTGGCATAAAGGGATTACTTTTGTATGCAAACATTGCGATGAAATATTTACCATTTGGACGTCGTACATGAGTCACATGCGCATCAAACACCCGTCGGAGTTCATATGTGGCTACTGCGGGTACTCCTTCATCAGCAAGTTGGGGCTGGCCATGCACAAGACTATGATGCACAAAGATATACAAGAGAAAGAATGTGAGGAAAATACAGAAGATGGTCCGTATTGCGAAGAATGTGACGTCAAGTTCATATCAGAGGAAGCGTACAAGAGGCACACGGTCATGTCCACCAAGCACACACAGACTACAGACTCTATTAAAGGCTGCCGGACTTGTGGCGCGATGTTCGATAATTCCGAAGAGTTGCGACTGCATAATCGTAAGGAACATACGCGCAAGAGACCAAAGAACTATGGGAAGAAAGGTAAACACAGCTGGCCTGCTAAATGTGAACACTGTCCCGAGGAGTTCCCGAACGCTCGCGAGTACTGGACGCACTTCCGTCGCGCACATCCTGACAAGAAATACCCCATACAGAAGAACCACATTTGCGATATATGTGGCAAGGGTTTCAGGGGCAACGCCTTCCTAGTTTACCATCAGCGCACGCACTTCGAAGAACGCCCGTACAAATGTTCGCAGTGCGATAAGGCGTTCTACAGCAGATGGAAACTCAACCTTCACGAGAAGTCGCACTCCGACAACCGGCCTTATCCTTGTTCTGTTTGTTTCAAGTCTTTCAAGGAGAAAGGAGCCTTGGATAGACATTTTAGAATCCACACAGGTCAAAAGCCCTACGAATGTGAAATATGTGGCAAAGCGTTCTCACAATCAAACAGTAAGAAATTGCACGTTCGGACCGTACATCTGAAGCAACCAGGGCCAGTCAGGCGGACCCGGCTTGAGAGACGGAAGCAAGGGCCTAAGGAATCACCGGTGCAGCAGTCTATATACTGA
- Protein Sequence
- MEPELVKVCRICSIMDVKLHDLRSYPLEYYYESVIGTNPQYNNLPPYACYECAAMVRKFYFFRQKCLRSQAVLYGAKDSFGKIQSEKVKLIDRKGIHIVSNLKIVNLPNIDIDLAQEPKTNVEVKLGSYEDVDDKIKFDHNYASLQSMDAGLCSDDDETLLLYVEKESQNNDSDDEKVNLKEESEGLEIAVGTEDPGFVIEVPTVLETKKKRRLKKNGSSSNLRPRVAADGAWDDFAQYIDVITLTLEEQKEEIQKRKETSNYMNSPFQCNLCFKGFIDNDAWNHHVSKHAVTAGSIECEVCKFRFKTKSAYQKHASNHETKYACKSCPYVSSNTTQAKQHQGWHKGITFVCKHCDEIFTIWTSYMSHMRIKHPSEFICGYCGYSFISKLGLAMHKTMMHKDIQEKECEENTEDGPYCEECDVKFISEEAYKRHTVMSTKHTQTTDSIKGCRTCGAMFDNSEELRLHNRKEHTRKRPKNYGKKGKHSWPAKCEHCPEEFPNAREYWTHFRRAHPDKKYPIQKNHICDICGKGFRGNAFLVYHQRTHFEERPYKCSQCDKAFYSRWKLNLHEKSHSDNRPYPCSVCFKSFKEKGALDRHFRIHTGQKPYECEICGKAFSQSNSKKLHVRTVHLKQPGPVRRTRLERRKQGPKESPVQQSIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00121701;
- 90% Identity
- -
- 80% Identity
- -