Aput011313.1
Basic Information
- Insect
- Agrotis puta
- Gene Symbol
- pax6a
- Assembly
- GCA_943137145.2
- Location
- CALPBO020000466.1:436936-492763[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.4e-08 4.1e-05 23.5 0.1 1 38 300 338 300 341 0.92 2 2 0.4 2.5e+02 1.7 0.2 23 40 745 762 745 765 0.87
Sequence Information
- Coding Sequence
- ATGCATAGCGCGGCGATGGGGGGCGGAGCCCTATTCGGGTGTTCCTCTGCCGGTCACAGCGGCATCAACCAGCTCGGCGGGGTCTATGTCAACGGCAGGCCTCTACCGGACTCGACGCGCCAGAAGATCGTGGAGCTGGCGCACTCGGGCGCGCGGCCTTGTGACATCAGCCGCATCTTGCAGGTCTCCAACGGCTGCGTCTCCAAGATACTCGGCAGATATTACGAGACGGGGTCGATAAAGCCCCGGGCGATTGGAGGGTCCAAGCCAAGAGTGGCCACCACACCGGTGGTCCAGAAGATAGCTGACTACAAGAGGGAGTGCCCTTCGATCTTCGCCTGGGAGATAAGGGACCGCCTGCTGAGTGAGAACGTGTGCAATAACGACAATATTCCTAGTGTATCTTCAATTAACCGGGTGCTTCGGAACCTAGCATCGCAGAAGGAGCAAGCAGCATCAGCGCAGAACGACAGCGTGTACGAGAAGCTGAGGATGTTCAACGGTCAGGCGGCGACGGGGTGGTGGTACCCTGGTCTACCAGCCGCCCCGGCAGCGCCAGCGATACCTGCACCACTGCCACCGCAATTGAACAGGACTACCGCTGAGGAGCATAAAAGAGATCCCTTACAATCGGAGGCTGGATCCGACGGCAATAGTGAACACGCATCATCGGGAGACGAGGACTCGCAGATGAGGCTACGACTCAAGAGGAAGCTGCAAAGAAACCGGACCTCCTTCACCAATGACCAGATAGATAGCCTTGAGAAAGAATTCGAGCGGACGCACTACCCGGACGTGTTCGCCCGGGAGAGGCTGGCAGAAAAGATTGGATTGCCTGAGGCACGTATCCAGATGCCACGTAAATACTCCCGAACCTCTTCGCGGGCCACTTCTTATACAAAAGAAGCGCTGCAATTAGCCATGCAGAAAATAAATAATAAGGAGCTCACCTATGCAGCCGCTTCAAAAATGTACGGCATACCTACATCCACACTTAGTGATAGAATCCTGAAGAAAACAGGGATAATATGTGTAAATGAAATTAATAAGATTACGTCTTATAACGGCTCTACTTCTACAAATAATAATATTGATAACTCTAAAATTTTGGACTCACCGACTTTAGAACATAGAAACAGTCTGCTACAACCGCTCGCCAGTTTCGAACAAATGCTTCTAGAAAAAGTTTCAAAACACCCTCAAAACTCTAAGAACAATATAGCTGTTAAGTTAAAACGTGTCGCGAAAGGTGCCGAAGTGATTACAAAGTCTTTTCTAGAAAAACAGCAAGAGATAGAATTAACAAAGGAAAAAGAAATACGGAAGACAACAAAACGGAAACAAAAACTTCAATCTAAAAATGATGCATTTGATCCTATACCAGGACCATCTGGAATTCAAGATAAAAACTTAAGAACAGAAGCAACTGTAATGAATGTGCCGATCTTGACTAATAAGAACAATACTGACGTGTGTATTTCTAAAAAAGGCAAAGGAGTAGGAAAAAAAACTAGAGCTGACAAAGAAAATGATTCAAAAGTGGACAAGTATGATGAACACAAGAAGAAAAGTGTATTAAATAAATCAGGCCAAAAGAAAACTACAAAGACAGCTATGAAAAAGCGTAAAAGATCTAATAGCAGTGTAACGACAATTGAAAGTGTTCAGATGAGCATACATAGTGAGTCTGACTTATTAGATTCTTTTAGTGACATATTATCTGACTGCGATAAATTGACTGACTTTAATATGTATGAGGAAAACAAGACTGACTTGGAATTAGCATCTAGGGAACAACAAATTGAACAAATACTTAAAGAAATACAGGACATGGATAATAATCAAGAGAAAAAAGCAAGCCAAAGGGATGATACCTGCGAAGAGAGATGTGACATAATTCCAGAAATTCATACGAAAGAGACAAATGTTAAGGCAAATGATAATAATAAAGTGACTATCTTATCATCTGTAAAAATCACACCAGAAAACCAAGCTTTCTATAAAATTTTACCCAGAAGTTTACAACTAAAGCCAATTGATAAAGATTTAGATTTGTTTACTAACCAAAAGCGAAAACTGGCACATAGTACAAGCGTATCTAATATACCAAAGAAAAAAACAAAGAAAGTTAATTGCCCTACAAAAATAAAGACAAAAGATCAAAAGGATTTAAGTGGAAACTTTTATATCAACATTGATAATGATGATGAGACCAAAAATTATATTGATGATTCGAAGAAATACAGTATTGGGGATACAGTTCTTGTTAGATATTTCAAACGAACTTGGACATATTACGTCGGTGTCATTGAAAATATTGATATCAATTCAAACCCAAATATGTACAAGATAACATTCTATAGAAATGTTGGCAAGAAAAACAACATAAAATTTGTTATTCCTAAGCGTAAAGATCAAGACTGCGTACCTGATTCTAATATAGTTAAGGTCTGGTTTTCCAATCGGAGAGCGAAGTGGCGTCGTGAAGAGAAGCTTAGAAGTCAAAGACGAGATGCCCCGGCTGCGTCGCCCCCCGCACCCCCTACACCCAGGATACCGCTGAACGGAGGCTTCAATTCCATGTACAGCCCCATACCACAACCCATCGCTACTATGGGGGAGTCTTATAGTGCGCTTGGTTCCGACAGCGCGATGTCGGGAGGACTGACTTCGTCGTGCCTGCAGCAACGAGACGGCGGGTACCCCTACATGTTTGGCGATGTGCTGGGCAGTGGAGGCTACTCAAGAGCACCCGCGGCACATCAACAGCATGCGGCATATTCACAGCCGCAAGGAACTGCTGGCACTGGTGAGTTTGAAAGAAATACTTTTTTGTTTTTGGGTTTAACAAATCAACATCGACCTTAG
- Protein Sequence
- MHSAAMGGGALFGCSSAGHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECPSIFAWEIRDRLLSENVCNNDNIPSVSSINRVLRNLASQKEQAASAQNDSVYEKLRMFNGQAATGWWYPGLPAAPAAPAIPAPLPPQLNRTTAEEHKRDPLQSEAGSDGNSEHASSGDEDSQMRLRLKRKLQRNRTSFTNDQIDSLEKEFERTHYPDVFARERLAEKIGLPEARIQMPRKYSRTSSRATSYTKEALQLAMQKINNKELTYAAASKMYGIPTSTLSDRILKKTGIICVNEINKITSYNGSTSTNNNIDNSKILDSPTLEHRNSLLQPLASFEQMLLEKVSKHPQNSKNNIAVKLKRVAKGAEVITKSFLEKQQEIELTKEKEIRKTTKRKQKLQSKNDAFDPIPGPSGIQDKNLRTEATVMNVPILTNKNNTDVCISKKGKGVGKKTRADKENDSKVDKYDEHKKKSVLNKSGQKKTTKTAMKKRKRSNSSVTTIESVQMSIHSESDLLDSFSDILSDCDKLTDFNMYEENKTDLELASREQQIEQILKEIQDMDNNQEKKASQRDDTCEERCDIIPEIHTKETNVKANDNNKVTILSSVKITPENQAFYKILPRSLQLKPIDKDLDLFTNQKRKLAHSTSVSNIPKKKTKKVNCPTKIKTKDQKDLSGNFYINIDNDDETKNYIDDSKKYSIGDTVLVRYFKRTWTYYVGVIENIDINSNPNMYKITFYRNVGKKNNIKFVIPKRKDQDCVPDSNIVKVWFSNRRAKWRREEKLRSQRRDAPAASPPAPPTPRIPLNGGFNSMYSPIPQPIATMGESYSALGSDSAMSGGLTSSCLQQRDGGYPYMFGDVLGSGGYSRAPAAHQQHAAYSQPQGTAGTGEFERNTFLFLGLTNQHRP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00042598;
- 90% Identity
- iTF_00042598;
- 80% Identity
- iTF_00042598;