Aput008609.1
Basic Information
- Insect
- Agrotis puta
- Gene Symbol
- cheC
- Assembly
- GCA_943137145.2
- Location
- CALPBO020000335.1:687048-697372[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-12 3.9e-09 36.3 0.0 1 38 25 63 25 70 0.87
Sequence Information
- Coding Sequence
- ATGGGACGTAAATATAAAAGGACTTACAGGCATACCAGAAATGGTAAATATTATACACCCTATAATTCATTTACGAAGGACGACCTGGAAACGGCAATGGAAGAAGTTAATAATAAACATATGTCAATTAGGAGCGCAGCAAAACATTTTAATATCCCTAAATCGACATTATCTCGTCACTGCATGAAGCTCAATTTGATGCAAGAAAGAGCTGGACATCCCACAATATTTAGCAGTGAAGAGGAACAAATATTTGTGGATTATTGTTTGCTTCTAAGTGAATGGGGTTTTCCGATGGATAAAATGGATCTAAGGGTTTTCGCTCAACGGTATTTGAATAAGATAGGAAAAAATGTGAGAAACATGAAGGATAATTTACCTGGTCCTGACTGGGCACAAAATTTTGTCGAAAGACATAAACACAGGCTGTCCCATCGGTTAGCTGCTAACATTTCATCAGACAGAGCTGAAATAACAACCGCCGTCATTGACAATTTTTTTGAAAATTATTCTAAGTCCGCACACGGGTACTTGAAATATTACAAGAAATTCGAGGAGGAGATCAGCCAACAACTGAGAATAAAAGGAAGAAACGATGCGACGTACAACCTGGAAAAAGCATCACAGCAGCGGATCTTGACTCAAAGAGAAGTACTGTTCGTTTATGGCTCCGGCGGTACGACAACGAAGGGAATATGCGAGATCGGACTGCACCCGGTGGTCCGCGTATTATCAACAGCCAGGATGTTGAAAGACTGGTTAAGATCCGTGAACAACAACCATTTGTGTCGACAAAACAGTTAG
- Protein Sequence
- MGRKYKRTYRHTRNGKYYTPYNSFTKDDLETAMEEVNNKHMSIRSAAKHFNIPKSTLSRHCMKLNLMQERAGHPTIFSSEEEQIFVDYCLLLSEWGFPMDKMDLRVFAQRYLNKIGKNVRNMKDNLPGPDWAQNFVERHKHRLSHRLAANISSDRAEITTAVIDNFFENYSKSAHGYLKYYKKFEEEISQQLRIKGRNDATYNLEKASQQRILTQREVLFVYGSGGTTTKGICEIGLHPVVRVLSTARMLKDWLRSVNNNHLCRQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -