Aips025932.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrotis ipsilon
Gene Symbol
-
Assembly
GCA_028554685.1
Location
CM052983.1:8034061-8064525[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 0.00018 0.018 16.4 3.6 1 23 36 58 36 58 0.98
2 31 7e-05 0.0071 17.7 0.4 1 23 65 88 65 88 0.93
3 31 5.3e-05 0.0053 18.1 0.3 1 23 96 119 96 119 0.92
4 31 0.00021 0.021 16.2 0.3 2 23 126 146 125 146 0.98
5 31 1.6 1.6e+02 4.0 1.3 11 23 173 185 169 185 0.85
6 31 1.6 1.6e+02 4.0 1.3 11 23 212 224 208 224 0.85
7 31 1.6 1.6e+02 4.0 1.3 11 23 251 263 247 263 0.85
8 31 1.6 1.6e+02 4.0 1.3 11 23 290 302 286 302 0.85
9 31 1.6 1.6e+02 4.0 1.3 11 23 329 341 325 341 0.85
10 31 1.6 1.6e+02 4.0 1.3 11 23 368 380 364 380 0.85
11 31 1.6 1.6e+02 4.0 1.3 11 23 407 419 403 419 0.85
12 31 0.0048 0.48 11.9 0.8 1 20 425 446 425 448 0.87
13 31 1.6 1.6e+02 4.0 1.3 11 23 472 484 468 484 0.85
14 31 0.0048 0.48 11.9 0.8 1 20 490 511 490 513 0.87
15 31 0.42 42 5.8 0.7 11 23 538 550 536 550 0.92
16 31 1.6 1.6e+02 4.0 1.3 11 23 577 589 573 589 0.85
17 31 0.028 2.8 9.5 0.5 9 23 626 640 625 640 0.95
18 31 1.2 1.2e+02 4.4 0.7 12 23 669 680 666 680 0.88
19 31 0.0048 0.48 11.9 0.8 1 20 686 707 686 709 0.87
20 31 0.0048 0.48 11.9 0.8 1 20 712 733 712 735 0.87
21 31 1.6 1.6e+02 4.0 1.3 11 23 759 771 755 771 0.85
22 31 1.6 1.6e+02 4.0 1.3 11 23 798 810 794 810 0.85
23 31 1.6 1.6e+02 4.0 1.3 11 23 837 849 833 849 0.85
24 31 0.0048 0.48 11.9 0.8 1 20 855 876 855 878 0.87
25 31 0.00036 0.036 15.5 0.8 1 23 881 905 881 905 0.90
26 31 0.0021 0.22 13.0 1.2 1 20 911 930 911 932 0.93
27 31 0.0026 0.26 12.8 0.8 2 23 938 960 937 960 0.96
28 31 0.47 48 5.6 0.1 1 23 969 992 969 992 0.94
29 31 6.9 7e+02 2.0 5.0 3 23 1000 1020 998 1021 0.94
30 31 2 2e+02 3.7 6.4 1 17 1316 1332 1316 1338 0.88
31 31 6.3 6.4e+02 2.1 0.4 2 23 1349 1369 1348 1369 0.73

Sequence Information

Coding Sequence
ATGACGCTTGACCTTGATGAATGTCACGGGAGCCGGCGAACGACACCGGTCAACGCCCGATCAGCTGACAAGCGCACAGATGATTCAAATAACGgcGAGAAACCATTCCAATGTCGTTACTGCGACTATGCTTGTCGAGACAGCTCCACGGTAAGGAGGCATATGGAGAGGCATCTAGGAATATCTAAGACTTACCCGTGCTCCGTATGTAATAAGAATTTCAAAAAGAAGATGTCACTACAAGTACATATAGACGAAGTACATTTTGATCTGGACACGAGGAAGTACCCCTGTGAGCAGTGTGACAAGATGTTCAAAACTAAGAGGACGCTTAGCTCTCATGTTATCGCAGTCCACGACAAGTCAAATCGCGTCAAATGTGAGATCTGTGGCCTCGTCGTCACAAAAAACAATCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAAAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGGTGATTTAAAACGCCATCAATTAATCCACTACCCGGATTACCAACATATTTGTACAGTCTGTAACAGACGGTTCCCTCGCAAGTGGAGGCTCAAGAAACATACCTTGAATGGATGTCAAAGAGTACAGTGTCATGACTGTGGACAGCTatttacAGCGAAGAAATTCCTCGCCCAGCACATAAAGAATGCTCACGGTCCCTATCCAAAATCAAGAGAGTATCTCTGCGATGTTTGTGACATGGTCACTTACAGTAGGCGAGGGATCATACAACACTTGAAGTATGGACATGGTACTGAGAAGgacACGATATGCCAAATATGTAGAAAGGATTATTTCAAATGTCTAACTTTGAAGGAACATTATTTAAGTCATCATAACTTTATTTACACTTTGATGGATCAAAAGAAAGATGATTTGATAGAAATAAAAGAGGAACCTTTCGAAGAAATGGAACACGTAGCGGACCCCACGGAATTTATATATGAAGTTGATATACAGAAAACTGAAATCGATGAAATACCTTCAGATCCACCATTACAACTCCAGCCGCCGTCCCCTCAACACTTCCTAATAGATTCAGATTCCATCACATACTCTAAGAAGGTGTTATCAGAGGATATATCTCGCAGTTTAATAGATAAGGGTGGAGTGACTGATGTCTTCCACGAGTTGTTTATAGGACATGCTTTGGATATTAGTGGGGCTCCAGTAGTGACcaAGTTACCAAAACAAATAGTTGATGAGGAGAAAGAAAAGCACGTTGAGCAACGTCTAGAAAAACTTCTAACTGAAGTGCGTATGCGCAACCAATGGGTAGTTTTGGAGAAATTGCGCAAACAATACAATAGACGGATCAAAATGGCTACCAGTGGTGGAGAGAAGAAAGAACAAACATCAATAAGATATTTCAAGAAAACAGAAAACAATAACGAATCTActaaaacacaagaaaatacCAAAAATGATGAAGAAAGCAATATCGTAGGTGATGAAACAAGAAATAACCAAAAAAATGATGAATTGAACAAAGAACAGATTAACTTGGAGCAAGAAAATGGTGAAACTATTGAAAATGATGAAATTGGTGAAGAAACAATCAATGGTGATGTAATTGTTAAAGAAACAATCAATGGTGATGAGATGGATGATGGAGATGAAACAATAGATGATGAAAAAGATGTAGATTATAGAGAAGATGATTTTGAAAGTAACAGCGATGAAGAAACAAATCCGAATGGAAAACTGAAGTTTAATACTCATCAgtgttatatttgttttaagCTCTTCACAACAAAATCAGATTTGAAGTTCCACTGCAAGGAACACTTCGACATATGCAACGATAAAATGTTAAAGAAATGCCCGTTTTGTGGCTATGTCACTAATTTAACAATTACAAGACATATCCGATTGGTTCATAATGTTACTTTAGAAATACCGTACGGACGTATTAAGGAAAGAGATACGGGAATAGGGTCCAAATAtgtatttcaaattgacaaagacTGTGACCTAGAAGTTATACCAAGTgatgagtgcgcgcgcctagagcacgacacagagctgtcaaacaactga
Protein Sequence
MTLDLDECHGSRRTTPVNARSADKRTDDSNNGEKPFQCRYCDYACRDSSTVRRHMERHLGISKTYPCSVCNKNFKKKMSLQVHIDEVHFDLDTRKYPCEQCDKMFKTKRTLSSHVIAVHDKSNRVKCEICGLVVTKNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMLQAMREEIQGYGESCVCYKNKQNLQSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMSHMRRHIDVRPYRCSYKPCGKRFKDMSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMSHMRRHIDVRPYRCSYKPCGKRFKDMGDLKRHQLIHYPDYQHICTVCNRRFPRKWRLKKHTLNGCQRVQCHDCGQLFTAKKFLAQHIKNAHGPYPKSREYLCDVCDMVTYSRRGIIQHLKYGHGTEKDTICQICRKDYFKCLTLKEHYLSHHNFIYTLMDQKKDDLIEIKEEPFEEMEHVADPTEFIYEVDIQKTEIDEIPSDPPLQLQPPSPQHFLIDSDSITYSKKVLSEDISRSLIDKGGVTDVFHELFIGHALDISGAPVVTKLPKQIVDEEKEKHVEQRLEKLLTEVRMRNQWVVLEKLRKQYNRRIKMATSGGEKKEQTSIRYFKKTENNNESTKTQENTKNDEESNIVGDETRNNQKNDELNKEQINLEQENGETIENDEIGEETINGDVIVKETINGDEMDDGDETIDDEKDVDYREDDFESNSDEETNPNGKLKFNTHQCYICFKLFTTKSDLKFHCKEHFDICNDKMLKKCPFCGYVTNLTITRHIRLVHNVTLEIPYGRIKERDTGIGSKYVFQIDKDCDLEVIPSDECARLEHDTELSNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00041797;
90% Identity
iTF_00041797;
80% Identity
iTF_00041797;