Aips024066.1
Basic Information
- Insect
- Agrotis ipsilon
- Gene Symbol
- ZNF711
- Assembly
- GCA_028554685.1
- Location
- CM052980.1:1431707-1445314[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.18 18 7.0 2.1 1 23 415 437 415 437 0.97 2 12 0.035 3.6 9.2 4.0 1 23 444 466 444 466 0.97 3 12 1.1 1.1e+02 4.5 1.4 1 15 470 484 470 493 0.82 4 12 5.8e-06 0.00059 21.1 4.2 1 23 498 520 498 521 0.95 5 12 0.0014 0.14 13.6 1.0 2 23 528 549 527 549 0.97 6 12 2.9e-05 0.0029 18.9 1.4 2 23 563 584 563 584 0.98 7 12 0.54 54 5.5 2.9 3 23 590 611 588 611 0.95 8 12 0.00036 0.036 15.5 1.8 2 23 622 644 621 644 0.96 9 12 0.17 17 7.0 0.8 1 23 651 674 651 674 0.93 10 12 0.0038 0.39 12.2 0.2 6 23 687 705 687 705 0.95 11 12 0.00014 0.014 16.7 3.9 1 23 714 736 714 736 0.98 12 12 0.0011 0.12 13.9 0.4 1 23 741 764 741 764 0.97
Sequence Information
- Coding Sequence
- ATGGAGGCGACGTTGCCGTTGGTAGAGATAACTGTGAAACAAGAGCCTATGGATAGTGAGAATGTGGTGAAGGCTGAGAAGAATGACAACAATCAAGATGCTGAAGAAGTCAAAGAAGACGAACTATGGATCAAGGCGGAGCCCTATGATGAAGATTCTCAAGATGCAGCCAATGGAACAGTCTCCGAGAATGAACCAAAGTTAGATGAAGAGGTCCTGAATGATGAATTAAACAgaaACAGGCAGTCTCATGCGCCTTCAAGAAAACAGATTCTGGTGTTTCTAGATTTTCTGAATGAACACAGGGACTTGGCTAACTGCAGGTTGAGGAGCACTCCTGATGGTCGGGTTAGGGCGAACCAGCTTTGGCAAACCATTACGGAGACACTGAACAGCATCGGCCCTTGTAGTAAGACTATGCAGCAATGGCAAAGGGTATGGTCCGACAAAAAGTATTTGACAAGGAAAGCTGCGGCCGCCAGATTTACATTCTTATCATCTGCTAATAAATTCGCGTGCGCATCAGAACTGACTCTTCAGGATGAGAAAATACTGGCTATTTTGGGAGAACGAATTCCACCGAGTGGCGATGGTCTGAAGTCTACTACTCCCGAGCCAAAACCCCAAACGCCGAGACAGTCACAAGATGCCTCAGTAACATCAGTACCTTTAAACCGAGAACCCAAAAATATAGAATTAGATCCCCAACTAACCACCTCAACAGAACAGCTACCTTCACATCCAGAAGTTCCTCAACTACCAAGAAGACCGTATACTCCAAGAAAGACAGATTCTTCTCGAAATGATGAGCTATCTGGAAAGACCAGTGTCCCATCAGCACCAATAAATGTCCTAAGTCAACCAGATGCCTCTAAACCACCAGATGATCTACCGAAGCCTGATGGAAAATTGGACGACTCACAGTCTTCAGCTTTCATATCGGATCCTCCATCATCAATACCAGTTCAAAAAGGTAAGGCAACCAAAAATCTAAAACCAACGTTGCCGCTTAAGAAGAGATTAGAGAAATTAGTCAAGGCAGAAGATGGCGGCGAAGACAAATCGGAGGAAAAGCATGATCCTGAAGAAAATGAACAAAAAGCGGATGATGCTGAAACTAAGATGGAAACCCCCCTGATGTATTCCTACGAGACACTGAGGAACATAGAAATCGTGACCATAGACGAGGAGGAACGCTGCAAGGAGTTCAAAGAGACCTTGAAGTCCCGCCAGCATATGCGGCATGTTTGCGAACACTGTGCGCTTGGCTTTGTGCTGCAGCATGCTTATGATATGCATATGAAGGTTCATTCTCCGGAATCTGGCGACCATGAATGTTCGATCTGTCACTCCCGTCTTAAAACCGCTGACATGTTGTACCGGCATCGCTTACGGCATTTCCGCCGTTATCGGTGCCTGCTCTGCCGGACACGGTTCAAGGACAAGGATACTGCTGCCTGCCATGTGATGAATGATCACGCCGGACAGACCTTCGAATGTGATCATTGTGGGAGAGGATTCAAACGACCGCAGTACCTGAAGAGGCATGTACAACAACATCACACGAAGCCACATAATCTTGAATGTGGCATCTGCTTCCGAGTCTTCCATGAGCGTGGCTGGTATAGGACGCATATCAGGACCCACAACGAGGAGGTACGAGCCAAGACAGTCCGTCTACCGGCCACGTGTCAGATCTGCTCGCGAGAGTACAGGAACAAGGCCAGTCTGAAGCGCCATCTACTGACCCACGACGAAGACGTCCACTGCGAGATCTGCTACGAGAAGTGTAAGAATAAGATCACGCTGGGAACACACTACTTGAAGGTGCATAAAGAGAAATATGATGGTCCACCGGAGCAGACCTGCACAATATGCGAGCGTTTATTCTCGACGCGGGCGATGCTCAAGCGACACAAGCAGAGGATGCACAGCGATAGGACTAAGAAATACCAATGCGACCACTGCCAGCGCCTGTACCTGACCAAGGGCGAGGTCCGCGCACACATCACATGGTCCCACATGCCGGCCGAGGCCCGCGGCGGCCACTCGTGTCCGTGCGGGCGCGTGTTCCGCTCGCCGTCGCTGCTGCGGGACCACAAGGCGAGGTTCCACTCCGAGCAGCCGCCGCCCAGGGTACACCAGTGTGAACACTGCGAGAAGGCTTTTGCGAACAAACAAGTCCTAAATCGCCACAAGAAAGTCCACTCCAACGAGATGTATCCCTGCAAAGAATGCGGCTTGCTATTCAAAACTCAACCTTATGTGAAGGTCCATTACCAAATCAAGCATTTAAACATGACAAGAGAACAGATCAAGGCTCAGAGGAAACGCAACAGGACCCAGACGATTCAGAATAATATAAATAGGAGCACTAATTGGGAACCTCCAATTACCAACAAGAATCACAGTCCTGAAGTCCCTAATGAGAGTTTGGAAGACCCCCTTTTGGTGCAAGAAGGGGATATAGAGATCAAAATTGAAAAGGAAGACGATGAGTATGAAGTACCCACCTTTCAAGCTTTTGTGAATATTGGTAGAGATGTTACGGCATAA
- Protein Sequence
- MEATLPLVEITVKQEPMDSENVVKAEKNDNNQDAEEVKEDELWIKAEPYDEDSQDAANGTVSENEPKLDEEVLNDELNRNRQSHAPSRKQILVFLDFLNEHRDLANCRLRSTPDGRVRANQLWQTITETLNSIGPCSKTMQQWQRVWSDKKYLTRKAAAARFTFLSSANKFACASELTLQDEKILAILGERIPPSGDGLKSTTPEPKPQTPRQSQDASVTSVPLNREPKNIELDPQLTTSTEQLPSHPEVPQLPRRPYTPRKTDSSRNDELSGKTSVPSAPINVLSQPDASKPPDDLPKPDGKLDDSQSSAFISDPPSSIPVQKGKATKNLKPTLPLKKRLEKLVKAEDGGEDKSEEKHDPEENEQKADDAETKMETPLMYSYETLRNIEIVTIDEEERCKEFKETLKSRQHMRHVCEHCALGFVLQHAYDMHMKVHSPESGDHECSICHSRLKTADMLYRHRLRHFRRYRCLLCRTRFKDKDTAACHVMNDHAGQTFECDHCGRGFKRPQYLKRHVQQHHTKPHNLECGICFRVFHERGWYRTHIRTHNEEVRAKTVRLPATCQICSREYRNKASLKRHLLTHDEDVHCEICYEKCKNKITLGTHYLKVHKEKYDGPPEQTCTICERLFSTRAMLKRHKQRMHSDRTKKYQCDHCQRLYLTKGEVRAHITWSHMPAEARGGHSCPCGRVFRSPSLLRDHKARFHSEQPPPRVHQCEHCEKAFANKQVLNRHKKVHSNEMYPCKECGLLFKTQPYVKVHYQIKHLNMTREQIKAQRKRNRTQTIQNNINRSTNWEPPITNKNHSPEVPNESLEDPLLVQEGDIEIKIEKEDDEYEVPTFQAFVNIGRDVTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00043877;
- 90% Identity
- iTF_00041199;
- 80% Identity
- -