Aips026043.1
Basic Information
- Insect
- Agrotis ipsilon
- Gene Symbol
- -
- Assembly
- GCA_028554685.1
- Location
- CM052984.1:917785-920471[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.14 14 7.3 0.1 1 23 62 85 62 85 0.91 2 16 0.35 35 6.1 0.0 2 23 112 134 111 134 0.95 3 16 0.094 9.6 7.8 0.9 2 23 157 178 156 178 0.96 4 16 0.036 3.6 9.2 1.5 1 23 182 204 182 204 0.98 5 16 0.99 1e+02 4.6 1.5 1 12 209 220 209 223 0.90 6 16 0.0033 0.33 12.4 2.6 1 23 239 262 239 262 0.95 7 16 1.1 1.1e+02 4.5 0.2 1 23 370 393 370 393 0.92 8 16 0.071 7.2 8.2 0.1 2 23 420 442 419 442 0.96 9 16 0.082 8.3 8.0 1.7 1 23 464 486 464 486 0.98 10 16 4.5e-05 0.0045 18.3 0.6 1 23 490 512 490 512 0.98 11 16 0.9 91 4.8 2.3 1 14 517 530 517 540 0.89 12 16 0.015 1.5 10.4 4.3 2 23 548 570 547 570 0.95 13 16 0.00012 0.012 17.0 2.4 2 23 578 600 577 600 0.95 14 16 0.002 0.2 13.1 1.0 2 23 607 628 607 628 0.97 15 16 5.7e-06 0.00058 21.1 0.9 1 23 634 656 634 656 0.99 16 16 7e-05 0.0071 17.7 5.3 1 23 662 685 662 685 0.98
Sequence Information
- Coding Sequence
- ATGAAAGCAAAGAAATCCCCACGATCTTCAAAACGTATCGACAGTCAGGCGTTCAAAGAAGGCTCATTAAAGGTGCAATCTAAAGAAATGGTAAAGATGGAGATTGACAAACATTTGCAGAATATTCGAACCATTCTTATTTATTCGAATTCTACTCCTATCAAAAACCATACAGCGCATGGTTATTTGTGCGCTTTCTGCCCAGAGTACTTTGCTTTGCCGAAAGAACTCAAAGAACATACTCTAGAAAACCATGacaacgatacaaaaaaaagttttatgaaaGGTAGCAGCCTCTTTGAGTATGTCGTTAAACTTGATATCACTGGTCTAAAATGTGATATATGCAACGAAGTTATGGACGGATTAGAAACACTGATGGATCACTTACAGTCTCTTCACGGTCAAGTAATGCACAACGATATCAAGAATCATATTTTGCCTTTTAAATTTAAAGGTGACACGTTGAAGTGTGCCCTATGCCCAAATATCTACGACCACTTTAAGAAGCTACAGGAGCACATGACTGTGCATTACAGAAATTATATCTGTGAAATTTGTCACGCACCTTTCCTGAATAAGAGAACCTACAAAGGTCATATGTCCCGACATGAGGAAGGAAAATTCCCTTGCAAATTTTGTCGGAAAGTATTTGTTACTCATGTCAGAAAATTATGCCATGAGAAGAACATACATACCCATGATAGCAAACGGCATAAATGTCCTCATTGCAATGAGAAATTTGTTGCTTACAGTCAGAGGAATGCTCATATGGTCAAAGAGCATGGCGCGAAGCTTCCTGTCTTTCATTGTTTAGCTTGTGACAAGGAATTTGGTCTCGGCTGCCAAACAGAAATTAAATTAGAACCTCATGTAAGTAAAATATTAGACACACTCAATGCACCGAGACCTGCAAATCGAGACAGCAAAGTTGATTGGACTGTGACGGTCGCTAAAAAAGGTAGCCTGCAAACcatcaaaaaagaaataatcaaaGTTGGACCTCTCACAATAGCAAAAAGGGAAATAGATAAACATTTGCACAATATTCGTAATATACTTAAATTTTCAAATGCTACCCCAATCAAGTGTTACACAGGCAATGGTTTCATATGCGGCTTTTGTCCAGAGAACTTTTTATTACCACGAGACCTTAAGATACACACACTGCAGAAACatgacaacaaaaataaaagcatattCATGAACGGCCAATCTTTAAGTGCCTATGTCGTTAAATTAGACATAACTGGTCTGAAATGTGAAATATGCAAAGAAAATATTGACGGATTACAGCAACTGATGAATCATTTGCAAACAGAACACAAAATAATGATGTACACAGATATCAATAATCATATTCTTCCTTTTAATCTAGAAGGAGACTCATTTCAATGCGTTCTTTGCCCTAAAATCTACGAGTGTTTTAAGTTGTTGCAAGAACATATGAACTcacactataataattataactgtGAGACCTGCAACGCTCCTTTCGTAAATAAGAGAACCCTTAAGAGTCATATGGCTCGACATAAACAAGGCGAATTCACTTGTTCCTTTTGTCCTAAAATATTTGATACGAATGGCAAAAAGTTATGTCATGAAAAATTTGTACACATTGGAGATCACAGGAGAAATAAATGTCCGCATTGCCACGAGAAATTCACGACTTACGCAAAGAAAAATGAGCATATGGTAAAAGAGCATGGTACAAGCCCTCGTATCCTCAAATGTATGGCATGTGACAAGACCTTTACAAGAAGAGACAGATTAACTAGACACACTAAACGGGATCACTTAATGGAACGTAAAAATGAATGCAAGCAATGTGACATGAAATTTTATGGAAAGAAAGAACTGGATATGCACATGTTGAAACATACAGGTGAAAAACAATATAAGTGCGATGTCTGTTATAAAGCATTTGGACGAAAGAATACATTGAGGGAGCATTTGAGGATACATGCAGATGATAGGAGATTCAAATGTGAGCATTGTGGTCAGGCTTTTGTGCAGAAATGTAGTTGGAAAAGCCATATGAAATCCAGGCATGATGAGTTGGTATAA
- Protein Sequence
- MKAKKSPRSSKRIDSQAFKEGSLKVQSKEMVKMEIDKHLQNIRTILIYSNSTPIKNHTAHGYLCAFCPEYFALPKELKEHTLENHDNDTKKSFMKGSSLFEYVVKLDITGLKCDICNEVMDGLETLMDHLQSLHGQVMHNDIKNHILPFKFKGDTLKCALCPNIYDHFKKLQEHMTVHYRNYICEICHAPFLNKRTYKGHMSRHEEGKFPCKFCRKVFVTHVRKLCHEKNIHTHDSKRHKCPHCNEKFVAYSQRNAHMVKEHGAKLPVFHCLACDKEFGLGCQTEIKLEPHVSKILDTLNAPRPANRDSKVDWTVTVAKKGSLQTIKKEIIKVGPLTIAKREIDKHLHNIRNILKFSNATPIKCYTGNGFICGFCPENFLLPRDLKIHTLQKHDNKNKSIFMNGQSLSAYVVKLDITGLKCEICKENIDGLQQLMNHLQTEHKIMMYTDINNHILPFNLEGDSFQCVLCPKIYECFKLLQEHMNSHYNNYNCETCNAPFVNKRTLKSHMARHKQGEFTCSFCPKIFDTNGKKLCHEKFVHIGDHRRNKCPHCHEKFTTYAKKNEHMVKEHGTSPRILKCMACDKTFTRRDRLTRHTKRDHLMERKNECKQCDMKFYGKKELDMHMLKHTGEKQYKCDVCYKAFGRKNTLREHLRIHADDRRFKCEHCGQAFVQKCSWKSHMKSRHDELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -