Aips023525.2
Basic Information
- Insect
- Agrotis ipsilon
- Gene Symbol
- -
- Assembly
- GCA_028554685.1
- Location
- CM052979.1:1857544-1864813[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.014 1.4 10.4 0.0 1 23 215 237 215 237 0.97 2 12 0.00017 0.017 16.5 1.8 1 23 243 266 243 266 0.94 3 12 8.2 8.3e+02 1.8 2.1 1 23 280 302 280 302 0.89 4 12 8.6e-05 0.0087 17.4 3.2 1 23 884 906 884 906 0.98 5 12 0.009 0.91 11.1 4.4 2 23 912 934 911 934 0.96 6 12 0.00012 0.012 16.9 0.9 2 23 943 964 942 964 0.96 7 12 0.00011 0.011 17.1 1.1 2 23 968 989 967 989 0.97 8 12 0.088 8.9 7.9 1.4 2 23 1003 1025 1002 1025 0.96 9 12 1.1e-05 0.0011 20.2 2.0 1 23 1031 1053 1031 1053 0.98 10 12 0.0017 0.18 13.3 1.5 2 23 1060 1081 1060 1081 0.98 11 12 0.035 3.5 9.2 4.3 1 23 1087 1110 1087 1110 0.96 12 12 0.0035 0.35 12.4 2.9 1 23 1114 1137 1114 1137 0.96
Sequence Information
- Coding Sequence
- ATGGATGAAGACGAAATTTTTCCGGTGTTGTGTCCCAAGAAAACGTATTCAAAACCGTTTAAAAAGGTGGCAAGAACAGTTACAGAGTCTAATAATATGGAGAAGAGCTCTAGCCCGTATGATAAAAGCTATGAACCTGGTGTCCCATTGACGACAAAAGTTGCTGTTGAGTATTTGCTAAATGGGAAGCTGAAGACGTGTGTTTGCCGATACTGTCTCAAAGTAACGGTAGGGTTGTCTGACCTGGACCAGATAATGCAGATAGCAGGCACAGGAGTCTTGTATAAAGTGTCAATTCGGGAAATGATAGCCTGTTTCTACCCCTTCAAGACAAGAGAAGGTGACAATTTCCCAGAGAAAATATGTCAGAAGTGCCTAGACAGAGCTATAAATGCATACCTCTTCACGCAACAGTGCGAGCAAGCCGATAGGGCTTTACACAATTGCTTTGATGATATCGAAGAGAAATTCAACAAACTAGATCCCTTAGAAAGACCAAAAAAGAGAGGCAGACAAAAACTACACCCAAATTACAACAAATTAAATGTAGAACACAGTAAAGTAATTGATTACGCAGAACCGATACGAAACATCATCAATTTACAAACAGAATCGTTGACCAACGAACCTTATTGGAACGATTTTGAATGTAAGAAGTGCTGGGAAGTTCTCCCGGACCTAGAATCCTTACTGAACCATGAGCAAATACACCCAAAATACATGTGGTATAACTGCCGTTTATGCggtaaatcttttgtaaaacttaatcaattgaaaaaacatttcaacaatGTCCATGTGACAGGAAAAGAGGTTACCGAAGCTGTAGACAAGACTTTCAAATGTCTAGAGTGTGGTAACGTGACAGAGAATTATGCTCATCACCTCCAGCATGtagaaaaacataaatttaaaaGTGTAATGAAGCATTTAATTGAGAAGAAAACGGACCAACTATGCTTGGTCTGTCTTAACAAGTGTACGGATTTGGTGGAATTGGACAAAATGGTCTGCATACATGGAAATTGTCCGGAATTGGTTGGAGACAAAACACTGTACACGGTTCTAGCTTCTACTTTGCCCGATCGAAAATCATACAAATACCAAGAATTACATGTACCGCATAAAGCTGATAAAATGACTATTACTCAAAGAAAGAGGAAGCATGCAGAAATCGAGAATGTTCCGCATATCATTCCGGGAATGCGGTTCGTACTGTCTTTACCAAAGATAATTTCAAGGGATAAGTTTAAAACTGATGACTTTTACTACTATGTTTTCTGTGAACCACAAGCTGAGGATTACATTATCAGtacaattgataaaaatattgatactcACAATATCAAAAGTCGAAGAATTTCTGAAGTTACTGATGAAGAAACTATGGATTGTAATTTTGGTGATATCCTTAATGATGACTATGCAAAGAATGTATTTGGAGACTTTAATGATGATCCAATTATGAATACTAAAGCAACAATTACTGTTGTTGGGAAATATAATCCAGTAACTGAAGGGGTTATAGATGAAACTGATCTATTCAAATCAAGCAATTATAGAAACCAAATAGAAGTAAATGCTAACCCTGGTGTTAGAAATGCAACTGGTCAAATAGAGTCAGTAGGCTTGATAATAAAGGGTTATGCAACATCTATGATTGTACCAGATGATGAACAAAATGTTGGTTTAATACATGACGAGAGGAATTTTTGTAATGTTAAAGAAACAATGGATGTTGTCAGACCAGAAAATGACATCAAGGAAGAAACAGAAATCTTTGAAAAGGATACAATCGTAATACCTGATGAGTATCCAACAGATACGATAAAGAAAGAAGTTAACACATCATCTTTTAAGGATCCTCAGATTAGTATGTTTCAGTTCTCCAAACCAATAACTATGGAATTTGATCTTAACAAACATAATACAGATATGACATCTACATTTCAATTTTGTAATCCTGActatgatgaaaaaataaacctgGAAATGAATTCAGAAGAAAAGATTTCTGAACATGAAATTGTACCAATGAAGATGAACTACCTACACAACTTCGTTGGGACAAAAATATGCGAAAAGTGCCTTAATCACGCTATAActtcatacatttttatacaCCAGTTTAATTTTACTAGGGAACGGTTAGATTTATGCATTAGCCTTATGTTGAACAACCTTAGCAATATAGAACCGAGTGCTAACGTCTTTGTCCAGGTTGCACCACCAAGCATAATGGCCCCCCAAGAAGATTTAGACGAATCTTTACTTCTAGACGAAAATGACTTTATAGATGAGAGTAAACTTAAAATAGATGTCCTAGAAGATGAATTTAGAGTGAAATCCGAAAGCGGAAGCGAGAGTGAATCTCTACCAGAAGCCACTTTCAAAAATTCTCCAAAGTCAGAACCCGTTAAGGAAGAATTACCACCAGAAGATATGTTTGATTCTTCTCCGCCATCAAAACGGTTTTATGCAGAATTAAAATCAATCCCAGTTATAGAGAATTTAGCTAGGAGTGCAACTAAAACTTATATGAAGAAGAAGTTGGTAAACGGTATACAAAGTTCAAAATATCCTGTTGATGTTTGCAGTGAATTTTTAACATTCAACAAAAGGAAAAAAGTTGAAAAGGTTCCGTTGAAGTTCACTTGCCCTTTATGTAGTAAACATTTTATATCAGaatatttcttaaaaagacATATTCTTAAACATGTGAACAAGAAAGTTCAATGTAATTTGTGTCATAGTGTCTTCAAATCAAAGTTCCATTTGTATGAGCATACTAAAATGATACATTTACTAAATGAGAGCTTTTATATGACTTGTAAAGAATGTGGTAGAAATTTCACTGATACGGACAAGTTACAATCTCATGAAGAGAGGCACAGAATTAAACCTTGTCAGCTCTGCAATAAGGTGTATGTTACCCAAGCACATTACGAGAATCACATACAACGACACGCAGTCAAACTGAAGCTTCTAGAAGAAAAACGAGTCCAAACATGCAGTTTCTGTGAGAAAGAGTGTTCAAACGATAATGAGCTCTCGGTCCACGTgaataaagtacatttacaaataaaaccgTACAGTTGTGACATGTGTGATAGACAATTTTACACTGAGAGTAATTtgaaaaaccataaaaaaatacatagtatGCCTTCGAAGGAAACGTGTGAATTTTGTAGTAAAACTCTTAGTAGTAGAAAACAGTTGGTGATTCACGTTCGGAAACATATCGGGGCCAAACCTTTTTGCTGTCAAGTTTGCGGCCAAGCCTTTTATTCAGGTCATAAAGCTAAAAAACACATGAAAATCTACCACGGTGGCCGATTCTGCTGTAGAATCTGTAAATCCATATTCGCAACCAAATATGAACTGAAAAATCACGTGAATAGAGATCATAGTATGATTTAG
- Protein Sequence
- MDEDEIFPVLCPKKTYSKPFKKVARTVTESNNMEKSSSPYDKSYEPGVPLTTKVAVEYLLNGKLKTCVCRYCLKVTVGLSDLDQIMQIAGTGVLYKVSIREMIACFYPFKTREGDNFPEKICQKCLDRAINAYLFTQQCEQADRALHNCFDDIEEKFNKLDPLERPKKRGRQKLHPNYNKLNVEHSKVIDYAEPIRNIINLQTESLTNEPYWNDFECKKCWEVLPDLESLLNHEQIHPKYMWYNCRLCGKSFVKLNQLKKHFNNVHVTGKEVTEAVDKTFKCLECGNVTENYAHHLQHVEKHKFKSVMKHLIEKKTDQLCLVCLNKCTDLVELDKMVCIHGNCPELVGDKTLYTVLASTLPDRKSYKYQELHVPHKADKMTITQRKRKHAEIENVPHIIPGMRFVLSLPKIISRDKFKTDDFYYYVFCEPQAEDYIISTIDKNIDTHNIKSRRISEVTDEETMDCNFGDILNDDYAKNVFGDFNDDPIMNTKATITVVGKYNPVTEGVIDETDLFKSSNYRNQIEVNANPGVRNATGQIESVGLIIKGYATSMIVPDDEQNVGLIHDERNFCNVKETMDVVRPENDIKEETEIFEKDTIVIPDEYPTDTIKKEVNTSSFKDPQISMFQFSKPITMEFDLNKHNTDMTSTFQFCNPDYDEKINLEMNSEEKISEHEIVPMKMNYLHNFVGTKICEKCLNHAITSYIFIHQFNFTRERLDLCISLMLNNLSNIEPSANVFVQVAPPSIMAPQEDLDESLLLDENDFIDESKLKIDVLEDEFRVKSESGSESESLPEATFKNSPKSEPVKEELPPEDMFDSSPPSKRFYAELKSIPVIENLARSATKTYMKKKLVNGIQSSKYPVDVCSEFLTFNKRKKVEKVPLKFTCPLCSKHFISEYFLKRHILKHVNKKVQCNLCHSVFKSKFHLYEHTKMIHLLNESFYMTCKECGRNFTDTDKLQSHEERHRIKPCQLCNKVYVTQAHYENHIQRHAVKLKLLEEKRVQTCSFCEKECSNDNELSVHVNKVHLQIKPYSCDMCDRQFYTESNLKNHKKIHSMPSKETCEFCSKTLSSRKQLVIHVRKHIGAKPFCCQVCGQAFYSGHKAKKHMKIYHGGRFCCRICKSIFATKYELKNHVNRDHSMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -