Aips015511.1
Basic Information
- Insect
- Agrotis ipsilon
- Gene Symbol
- -
- Assembly
- GCA_028554685.1
- Location
- CM052969.1:13754751-13762085[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.4 4.4e+02 2.6 0.1 3 23 112 132 110 132 0.94 2 15 0.0041 0.41 12.1 0.1 2 23 136 158 135 158 0.95 3 15 1.3 1.4e+02 4.2 3.9 2 23 209 231 208 232 0.91 4 15 0.0048 0.49 11.9 0.6 2 23 390 412 389 412 0.95 5 15 0.023 2.3 9.8 0.1 1 20 420 439 420 441 0.94 6 15 0.0015 0.16 13.5 0.6 2 23 451 472 450 472 0.94 7 15 6.9 7e+02 2.0 1.5 1 23 488 511 488 511 0.84 8 15 0.00073 0.074 14.5 1.4 1 23 520 543 520 543 0.94 9 15 0.28 29 6.3 0.3 3 23 622 643 621 643 0.86 10 15 8.5 8.6e+02 1.7 1.5 1 23 648 671 648 671 0.89 11 15 1.6e-05 0.0016 19.7 0.9 1 23 677 699 677 699 0.95 12 15 0.00019 0.019 16.4 1.8 1 23 706 728 706 728 0.98 13 15 7.3e-05 0.0073 17.6 2.3 1 23 733 755 733 755 0.96 14 15 0.00025 0.026 15.9 2.3 1 23 761 783 761 783 0.98 15 15 1.1e-06 0.00011 23.4 1.0 3 23 791 811 789 811 0.97
Sequence Information
- Coding Sequence
- ATGTCTTCGGATGACTCTGATGATGAGCCGCTATCACTTATAGCAAATAAGAAATTAGGCCCAGAGCAAAATGAAGAGATCTCATCGGGTTCTTCGGAAGCTCCAatcaagaagaaaaagaagCTACCACTTAAACGATTGTCGGTCACGTTTAATCTTCAACGCAAGAAAGCTTGTCTTCAGCCACCGGTGGTGGAGCGGCCGGCAGACGTATGGCTGTACCTTAAAGACCTGAATCCTTCGGGACCTTACAGCTGCTTACTTTGTCCAGATTGGTTTATTAACAGATCGAAAATGATTGTACATTATGTTCTGAATCATAAGAAAGATTTCTGTGGTATTTGTAGatattttgtgCCAGATAGAGAAGCTTGGGTGAGCCATGTGAAGTTTCACACTCCCTGGCCATGCTCTCAATGTGTTGAGAACTTTGAAACCGAAGCAGATCTCCGAAATCATCTGCAATCGCAACATAATCTTGTGCACTGTCGCCTATGTCATTTCCGTGTACTGGATGGTGAGCCCTACCACTCACATTTGTTCCAAAAACACAATGTCTTCAATGTATCAAATAGAGATGAAGAAAATCTTTGGGAGTTAGAATATGATGGCACTTCAAACTTCCTCTGTTTACTTTGCAATAAATCTACCAACTCAACAAGAACATTCTTCAATCATTATATGGGGTACCACCATTTTACCTTGAAATGTTTCACAGCACTGTTGTCAGGAAGACACGTACCATTCTTAGTGTATGGTGCTGATCTCAGAGCAGAGTTCGTTGAAGAACAACTGAAACATCATGAAAGATATGGCTATGTTGACTCTGAGCTCAAACCTACTGACTCGGCTATAGAGGCTGACCAAAATGAGACTAGAGAATTAATAAAAGTCCTCATACcagaaataaaacaagaattAGAAACTATTGAGGATGCCAAAAATGATGATGGAACTGAGAAGACCAAAGATGATGAAGCTAATGATATTTACAAAAGCTACAAtggtattgatgattttgatgtTACTGCATTGGAACTGATAGTTGTACAGAAATGTTACTATGATTACATTAGTGATATACTGTCAGATGTTAATGCTAAATCTTTTTTTGAATACTCAGATGTTGATTATGACAAGCTTTCAACAGAAGTACCAATGGATATAGTTTGCACTCTGTGCAGCATCCGGTATAGTACTCTGACAAGTTTTACTGCTCATATGTTCAAGATGCACTGCATAAAGTCCTTGCCATTGTTTTCCTGTAGAATTTGTGCCGCTACTTTTGAGAGTCAACAAGATCTTGAGAATCACACGTCAAATGAGTTAGGAGAATTTGAGGATCTTTGGATATGCCAGTTTTGTGACAAAGAGTTTGACGACAGGGAGAACACACGGCGACATCTGACAGAACATTGGGATGATGTAGAGTATGACAACTGTTTCAGTCCACATTTAggtttcaaatgtcggtattgTCCAACACTATTTTGGCATGAGACGGACAGAGAGACGCATCAAGTGCGGGCGCATTTCTTCAATCATAAAGACGCGTATTACAAATGTGATActtgtaatgaaatatttagTGATAAGGTCTGGTTTATCCATCACTATATTGAGAAGCACAGTACTTTAGAAAAGACTGCACTGTACCTCCTCAAATGCTCCCTCTGCTGTGTGGTGCTGCCAACTATCGAGGAGATGAGAGCGCACTTCAACTGTGATCACGCTGAAGCTAGAAAGGTGTTCTGTTCGCTAGACTCCTGTCAGTACAAACCTTTGAGCCATAGGAAGTCTTTCAAGCTGCATTTGCGGTCGATGCACTCATCTCGTTCGTCGCGTGCGGACCGCGCGATGGACTGCGTGGTGTGTGGTCGCGAGTTCAGCAGCTCGCGGGCGTGCGGCGCGCACATGGCGCAGGCGCACGGCCCCGGCAAGTTCAAGTGTAAGCTGTGCAGGGAGATACTGCACACTGTGGATGAGAGGAAACTCCACTACTTAATAAGTCACCCGGGACAGCATCCGTTCGCATGCCCAGACTGCGGCAAATCGTTCCAGTACAAGTCGTCGTTGTACATGCACAAGCAAGACCATCTGCCTAACAAGCAGAACTACACTTGTACCTACTGTGGAAAGACTTTCTTGAAGCGCGATTCGTTCCGCGAGCACGTGCAGATCCATGAAGGTCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCGTGCAGCGCTCCAACATGTTACGTCACGAGCGACGTCACACGGGCGAGCGACCCTACGCCTGTCCGCACTGCCCCAGGACCTTCGCTGACAAAGGAGCCTGTAACTCACACACCAgGACTCACTTGAAGGATACATCCTATGGATGTGTTTACTGCGGCAAAACGTTCGTTCAGAAGTCTAAGCTCACGTACCATATCAGGAAACATACTGGAGAAAGTAAGTATCTACTAAAGATAACACTCCTAAGATCTAAGAGAAGAATAGTCTTCAAAATTCACCAGCGCACATTATGTGATGATATGAGACCCATAATTATTGTTGTATAG
- Protein Sequence
- MSSDDSDDEPLSLIANKKLGPEQNEEISSGSSEAPIKKKKKLPLKRLSVTFNLQRKKACLQPPVVERPADVWLYLKDLNPSGPYSCLLCPDWFINRSKMIVHYVLNHKKDFCGICRYFVPDREAWVSHVKFHTPWPCSQCVENFETEADLRNHLQSQHNLVHCRLCHFRVLDGEPYHSHLFQKHNVFNVSNRDEENLWELEYDGTSNFLCLLCNKSTNSTRTFFNHYMGYHHFTLKCFTALLSGRHVPFLVYGADLRAEFVEEQLKHHERYGYVDSELKPTDSAIEADQNETRELIKVLIPEIKQELETIEDAKNDDGTEKTKDDEANDIYKSYNGIDDFDVTALELIVVQKCYYDYISDILSDVNAKSFFEYSDVDYDKLSTEVPMDIVCTLCSIRYSTLTSFTAHMFKMHCIKSLPLFSCRICAATFESQQDLENHTSNELGEFEDLWICQFCDKEFDDRENTRRHLTEHWDDVEYDNCFSPHLGFKCRYCPTLFWHETDRETHQVRAHFFNHKDAYYKCDTCNEIFSDKVWFIHHYIEKHSTLEKTALYLLKCSLCCVVLPTIEEMRAHFNCDHAEARKVFCSLDSCQYKPLSHRKSFKLHLRSMHSSRSSRADRAMDCVVCGREFSSSRACGAHMAQAHGPGKFKCKLCREILHTVDERKLHYLISHPGQHPFACPDCGKSFQYKSSLYMHKQDHLPNKQNYTCTYCGKTFLKRDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACNSHTRTHLKDTSYGCVYCGKTFVQKSKLTYHIRKHTGESKYLLKITLLRSKRRIVFKIHQRTLCDDMRPIIIVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00072307;
- 90% Identity
- -
- 80% Identity
- -