Aips013188.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrotis ipsilon
Gene Symbol
-
Assembly
GCA_028554685.1
Location
CM052967.1:3186798-3196142[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.11 11 7.7 0.5 2 23 227 248 226 248 0.96
2 12 0.0025 0.25 12.8 1.7 1 23 255 278 255 278 0.93
3 12 1.3 1.3e+02 4.3 2.8 1 23 282 304 282 304 0.97
4 12 2.9e-05 0.003 18.9 3.3 1 23 309 332 309 332 0.96
5 12 0.099 10 7.8 0.2 2 23 341 363 340 363 0.95
6 12 0.12 12 7.5 0.0 3 20 375 392 374 394 0.95
7 12 0.00062 0.062 14.7 0.5 3 23 404 424 404 424 0.99
8 12 2.1 2.1e+02 3.6 0.1 3 23 440 461 439 461 0.92
9 12 1e-05 0.001 20.3 0.3 1 23 478 500 478 500 0.99
10 12 4.3e-05 0.0043 18.4 0.4 1 23 506 528 506 528 0.99
11 12 0.0018 0.18 13.2 4.2 1 23 534 556 534 556 0.98
12 12 0.00093 0.095 14.2 2.4 1 23 562 585 562 585 0.94

Sequence Information

Coding Sequence
ATGTCGGAGTCAGTTTCTGAAATAGCACCACAGCCAACAAGGAGAAGCAGACAACCAAACATTATTAGAAAAAGACCAGTTCTGAAGGTTATGGGCGAGGATGATTTCAAAATGCTTGAAGAAATGGAAGAGTCAGAGTCAGTTCCAGAATCAGAAACACAACCAATAAGGAGAAGTATTCGTAACAAACAATCAAgtgttaataaaaatgattctTTGAATGAATCAGTCCCTAAAACAGCTCAATCAAAAGAGAAAAGTAAACAACCAATAGCTGATAACAGAATAGTTATTAAAACTGAAGAAGATGTTTTCATTATCACTGATTCAATAGAAGAGTCAGAGTCGCTGTTAGAAGAACGAACAACAAAACAGAAAAGTAAACAACCCAAGAAATCAAAAAGTAAAGTTATTACGAATGAGAACACTGATGATTCCAATTTCAGTGAGCCAGGCTCAGAGATGGAAGAATCTGACCCAGAATCAGAAACAAACACTAAACAGAaacgtaaacaaacaaaacgtaAAAAAGGTACTACGGACCCTAATAAAACGAGTAGGCGTCCTGACTATAGTTTCTTTGATGACTATGGAACAGTTGAGTTTATGACCACCGAAGAGGCCAGAAAGGAGCTACTTGTAAGAAAACAgtctaaaaactataaaacatcAGCATTAAAGTGTGATATATGCTATACAGGATTTGAATTGAAATTGACTTACGAGAAACATCTAGAGAGACATACCCCTgaAAATGGAGACTTTGAATGTGACGTCTGTTTCTTAAGATTTCCTCAGAAGGTATACTTGCGTAAACATAAAATGTTCAATCATCGGAAAAAGTTCACCTGTAAACTATGCCcatttgtttgttataaaacGGACAAAGCAAGAAATCATGTTAGCATGCACCAAGgattgaaatatttatgtaaacattGTGGAGAAGAGTTCAGCATGCAAAGTACTTTACGGATGCACTACCGCACAAAGCATATCGATGAAACATTGACTGAAAGTGTTTGTCAGTTTTGCGGAGATATATTTGGCACATCGAAGGGACTGCGTTCACATACCATACGACTTCATAAGCAGgatACAAACAACAAGCTTGGTCCTGCGTGTGGTGACTGTGGTGTGTACTTCACATCTGAAATGGCGTGGAAGCGACATCTAGTGCTGTCATCTAGACATAAAGTCAaTATCGGTTGCAAATACTGCGGGGATACATTCTCGAAGGAGGTTGACCTAAAGGTTCACTTGAAAATGCATACAAGGCAGAGCAACACATACAATAATACCAAAGTACCCGCCGCATGTCCTATTTGTGAGAAATGGTTAGAAACCCGCGAGGAGTACAAAGATCACGTGACGTCCGAGCACCCGGACAGCGACGAGGCGGCGAAGTTCCTCGGAACACACGATAAGCCCTATGTGTGCGAAAATTGTGGAGCAGCGTTTAAGAATAAATGGTTCTTAGAAGACCACCAACGGAAACACACAGGCGAGCGACCGTTTAAATGCTCGCAGTGTAACAAAGCCTTCCGCACGGGCACCGCGCTCGCCATACACGTGCAGACACACAGCGGACTGAAGCCACACAAGTGCGAGATATGCAACCGTGCGTTTACCTTCAAGTGTATCCTTGCCAGACATATGaagATTCACCTCAACATACGTCCATACACATGCACTATCTGCGACAAAAAGTTCATCAACGCGTGCGACGTGAAGTGGCACACTATACATGTACATGACAAGGATTCAAATCCTATAGAAGTGCTCCTGTCTGCTCCAATTGTGCCAAATTCTGAGAAGAGGAACGTTGCCGATAGGTGCTGTTATGTAGCACCTATTAGGGAAGACTTTGGTCAGCACTACACAGGGGAGAGCCCTGGTATTTGCAGCGATTTGGGGCAGGTCAAATATCGAAGAACCGATCCCAGTCAGATCCACACTCTAGTAAAAGACCAAAACGGTTATGAGCCCATCGAAACAATACCCCTCACTCATCGTAAAAAGCTGAAAAAGGTCTCTTGTGATACATGTAAAAGGAATAAAACAAGTTCGCAACACAATCTTCAAGCAAGTGATAAACCATCTTTGTATGCTGCAGAATATGACGGCAAGTACTGGCTGAAAGTAGACAGCAGCGAAGAAGTTGACAAGTTTCTTTTAAGGAgcgATGACACCAGTATCCGCTCTTCGAAACACATCTTCATCTCGAAGACCCCACGAGTAAAGGTCATTGCAGAGAAGTTTTCAAAATACAAGAAAGGCAATCTTGAACTGCGTAGACTGGAGGAGAAGGTGGTTTGCGTGGAGTACGACATTTTATGGAAGTCTAGCAAGGACGATGTTCTGAAGCCGACGCAGAAGATGAGGGCTTTTTTCTCAATCAAACCTTCTGCTGTTAATGACAGAGGCGAGAAACAAGgGCTCCCAACATTTtccgaaaatataaaaaacgaattcaaaatattagacGAAGACCTCCAGAAATTAACAGACAAAGAGATAGAATTTATTGATGAAAAGATAGCAGAAAACAAATGTTATCTTGAGGACATGAGGCGTATTTTGAAACGGAAGAAAGTAATTAACGCTCAGAAGAATAAGACTTCCTTAGATTTGCAGTCTCTTTACGAAATGGCTATAAGGGAAAGACCGCCATTGAACGATGATCTCTCTGGCGCAAATTTATTGTCAAAGGCTGAATTACAAGAAGTAAAAGAGTTGATTCTTCAGCGGTGTACGTCTAGTATACATGGGTTTaggagaagaaaaataaaacaaaatgagacGGGGTTAGCACCGGACATCGGTGTCATATCTGAAAGTATGATGGCAGAGTTGTTAGCGATAACGAAAAACTTGAATTTCTAG
Protein Sequence
MSESVSEIAPQPTRRSRQPNIIRKRPVLKVMGEDDFKMLEEMEESESVPESETQPIRRSIRNKQSSVNKNDSLNESVPKTAQSKEKSKQPIADNRIVIKTEEDVFIITDSIEESESLLEERTTKQKSKQPKKSKSKVITNENTDDSNFSEPGSEMEESDPESETNTKQKRKQTKRKKGTTDPNKTSRRPDYSFFDDYGTVEFMTTEEARKELLVRKQSKNYKTSALKCDICYTGFELKLTYEKHLERHTPENGDFECDVCFLRFPQKVYLRKHKMFNHRKKFTCKLCPFVCYKTDKARNHVSMHQGLKYLCKHCGEEFSMQSTLRMHYRTKHIDETLTESVCQFCGDIFGTSKGLRSHTIRLHKQDTNNKLGPACGDCGVYFTSEMAWKRHLVLSSRHKVNIGCKYCGDTFSKEVDLKVHLKMHTRQSNTYNNTKVPAACPICEKWLETREEYKDHVTSEHPDSDEAAKFLGTHDKPYVCENCGAAFKNKWFLEDHQRKHTGERPFKCSQCNKAFRTGTALAIHVQTHSGLKPHKCEICNRAFTFKCILARHMKIHLNIRPYTCTICDKKFINACDVKWHTIHVHDKDSNPIEVLLSAPIVPNSEKRNVADRCCYVAPIREDFGQHYTGESPGICSDLGQVKYRRTDPSQIHTLVKDQNGYEPIETIPLTHRKKLKKVSCDTCKRNKTSSQHNLQASDKPSLYAAEYDGKYWLKVDSSEEVDKFLLRSDDTSIRSSKHIFISKTPRVKVIAEKFSKYKKGNLELRRLEEKVVCVEYDILWKSSKDDVLKPTQKMRAFFSIKPSAVNDRGEKQGLPTFSENIKNEFKILDEDLQKLTDKEIEFIDEKIAENKCYLEDMRRILKRKKVINAQKNKTSLDLQSLYEMAIRERPPLNDDLSGANLLSKAELQEVKELILQRCTSSIHGFRRRKIKQNETGLAPDIGVISESMMAELLAITKNLNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-