Basic Information

Insect: Agrotis ipsilon
Gene Symbol: -
Assembly: GCA_028554685.1
Location: CM052957.1:4691796-4694761[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.4e-05 0.0055 18.0 8.6 1 23 251 273 251 273 0.98

2 11 0.0094 0.95 11.0 3.0 1 23 279 302 279 302 0.95

3 11 0.00034 0.035 15.5 0.6 1 23 312 334 312 334 0.98

4 11 0.0067 0.68 11.5 2.4 1 23 341 363 341 363 0.97

5 11 5.6 5.7e+02 2.3 5.7 1 23 369 391 369 391 0.96

6 11 0.00011 0.011 17.1 0.3 1 23 397 420 397 420 0.95

7 11 0.0047 0.48 11.9 1.6 2 23 426 445 425 445 0.96

8 11 7.9e-07 8e-05 23.8 1.0 1 23 451 473 451 473 0.97

9 11 2.5e-05 0.0025 19.1 2.5 1 23 479 501 479 501 0.98

10 11 0.00017 0.017 16.5 0.7 1 23 507 530 507 530 0.97

11 11 0.021 2.1 9.9 1.1 1 22 536 557 536 557 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.4e-05	0.0055	18.0	8.6	1	23	251	273	251	273	0.98
2	11	0.0094	0.95	11.0	3.0	1	23	279	302	279	302	0.95
3	11	0.00034	0.035	15.5	0.6	1	23	312	334	312	334	0.98
4	11	0.0067	0.68	11.5	2.4	1	23	341	363	341	363	0.97
5	11	5.6	5.7e+02	2.3	5.7	1	23	369	391	369	391	0.96
6	11	0.00011	0.011	17.1	0.3	1	23	397	420	397	420	0.95
7	11	0.0047	0.48	11.9	1.6	2	23	426	445	425	445	0.96
8	11	7.9e-07	8e-05	23.8	1.0	1	23	451	473	451	473	0.97
9	11	2.5e-05	0.0025	19.1	2.5	1	23	479	501	479	501	0.98
10	11	0.00017	0.017	16.5	0.7	1	23	507	530	507	530	0.97
11	11	0.021	2.1	9.9	1.1	1	22	536	557	536	557	0.94

Sequence Information

Coding Sequence: ATGGCTAACGTAAAGAGTAGATTAAACGCACCCAAAAGTGCATCtacaaagaagaaaaagaagggggataaaacaaaaaaatcgtcAACAGGTCCCAAGAAAACACCCTTGAAGAAAAATGAACCAGTTATCAATATGGTTATGAAACGACCATGTCCCCGTCCGGTTATGACATCCGATCAAAAAGTCAAATTCTTATTGAAAAATGGACATAAGCTCAGGGAGAGATTTATTGCTGCTAAACCCCCTATGAATGACAAACCAATTCCTGAGCAGGAAGCCAGCCTCTTGCCTCTCAGTGTTACACCAAATGATGAGCAAAAAGCAAATTCCAGAAAGAGACAAAGTAGCAATCTACCAAATATGTCTAAAAATGGTCAtcttaaaaagaagaaaaagtgcAATATGAAAGTTGTTGATAGTATTCTGATGGATGAACTGATGATTGGTGGCAGGAAGAATAAGCCTTCTAAAGAGGCACCTTCCAAGGAGCTCAATGTGCTTCCACCTTCAAGAGGTGGTGTGGACAATAACAATGACATTCAAATAACAGACCAAAACAACAAGAAACAAgagtatgatgatgatgtagtgaACTTATCTGATACATTATCTGCAAActctgaagatgatgatgaaagctgTTCAGATGATGCTAACAGTTCtgataaaaaagtttcaaaaaagaaaaaaaagccaaaggAAAGACATATTACTCTGAAAAATggtgttgttttaaaattagaatactTTGAATGCGACCATTGCAAGAGAACGTTCAACAGGAAATGTTCCTTACGCAGACATATGTTCATGCATCTCGGTTTAAAGCCATACAAATGTCGTTGTTGTCCGGAACGGTTCAGGAGCCTGTACAATTTGCAAGTGCACGTGGACCGCTATCACAAGTCAATATTAGATGATCCTGAGCTTTACATTTGCAATTTCTGTGAAAAACCATTCCTTGTGAAGGAAAACTTGAAGAAACATTTAGAAACTCACACAAATACTGAGAGTGCTTTCAAATGTATTTACTGTCCTAAATCATTTGCTTACCATATCTTGTTGATGCAACATGAGAAGAAACATCTGGTCAAAGGACGCCATCAGTGCACACTATGCAGTATGTCTTACCGCTGTCGCAATCTGCTTTACTTGCATGTCAAAAGCCACttgaaaattaaagattttatttgtcAATATTGTGGGAAGGAGTTTTTAAGGCCGAATTCCTTGAAGCGGCATGTTGAAGTGAGCCATGGTGAACATCGAATTGTGTGTCCGATTTGCAAAAAGAAGTTGAAGGGCCATTTGACTGAGCATATGCGCACGCATGAGAAGAAACGTCCACATGTGTGTCCTGAGTGTGGGCAGCGGTTCACACAGTCCACTCAGCTGAATGTTCACCGGCGCGCGCACACTGGCGACAGACCATACCCTTGTCGTATATGCAAACGATTTTTCTCGCATTCAAACGCTCTTATGTTGCATATCAGACGCCATACTGGTGAGAAACCTTTCCCCTGTGCAATGTGCCCTATGTCCTTCTCTCAATTGCCACACATGAAAACGCACATGAGTAAAATACATGGCAAGGAAAACCCATACAAATGCGCTCATTGCCAGACCTTTTTCAAACTCAAAGCCGAGCTTGATATGCATGAGAAGACTTGTTCAGAAGGTCCTGGCAATGAATCAGCTAAAGGTAAAAGGAAAAGGTTCAAGAAGGGCGAGGACGAAATAGAAGTGGAGTCGTCGATGTCTTTGTCTCGCATGAGGTTCCTGTTGGCCCTTCTCCTCACGATGATCGCTACCAAAGAAAAACTCAAATACTTAGGTTTCAACAAACGGCTGGTGGATGAGATTCTCGTCGAGTCTCTCGAGGCAATGGATAAGACTCCATGCAAAGACGAGAGTCTGACGCCAGCCAAACGTCTAAGGACAAACATTGAAATGTTCATCCATGGAACAGTTCCCAAAAACCAGATGGATAAGttcaagaaagaaaataagtctaCTGAAGATATTCTGGAATTATTGACTACTGACAAAGATAAGTAA
Protein Sequence: MANVKSRLNAPKSASTKKKKKGDKTKKSSTGPKKTPLKKNEPVINMVMKRPCPRPVMTSDQKVKFLLKNGHKLRERFIAAKPPMNDKPIPEQEASLLPLSVTPNDEQKANSRKRQSSNLPNMSKNGHLKKKKKCNMKVVDSILMDELMIGGRKNKPSKEAPSKELNVLPPSRGGVDNNNDIQITDQNNKKQEYDDDVVNLSDTLSANSEDDDESCSDDANSSDKKVSKKKKKPKERHITLKNGVVLKLEYFECDHCKRTFNRKCSLRRHMFMHLGLKPYKCRCCPERFRSLYNLQVHVDRYHKSILDDPELYICNFCEKPFLVKENLKKHLETHTNTESAFKCIYCPKSFAYHILLMQHEKKHLVKGRHQCTLCSMSYRCRNLLYLHVKSHLKIKDFICQYCGKEFLRPNSLKRHVEVSHGEHRIVCPICKKKLKGHLTEHMRTHEKKRPHVCPECGQRFTQSTQLNVHRRAHTGDRPYPCRICKRFFSHSNALMLHIRRHTGEKPFPCAMCPMSFSQLPHMKTHMSKIHGKENPYKCAHCQTFFKLKAELDMHEKTCSEGPGNESAKGKRKRFKKGEDEIEVESSMSLSRMRFLLALLLTMIATKEKLKYLGFNKRLVDEILVESLEAMDKTPCKDESLTPAKRLRTNIEMFIHGTVPKNQMDKFKKENKSTEDILELLTTDKDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01062157;
90% Identity: iTF_00041152;
80% Identity: -