Aips023485.1
Basic Information
- Insect
- Agrotis ipsilon
- Gene Symbol
- -
- Assembly
- GCA_028554685.1
- Location
- CM052979.1:1189708-1217634[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.2 1.2e+02 4.4 0.2 1 23 498 520 498 520 0.95 2 11 0.0042 0.43 12.1 1.7 1 19 534 552 534 556 0.90 3 11 0.00039 0.04 15.3 2.0 1 23 562 584 562 584 0.98 4 11 1.3e-05 0.0014 20.0 2.3 1 23 591 613 591 613 0.99 5 11 2.4e-06 0.00025 22.3 0.4 1 23 619 641 619 641 0.93 6 11 3.2e-05 0.0032 18.8 0.2 1 23 647 669 647 669 0.98 7 11 1.7e-05 0.0017 19.6 1.6 1 23 675 698 675 698 0.95 8 11 0.00011 0.011 17.1 2.6 1 23 704 727 704 727 0.96 9 11 7e-05 0.0071 17.7 1.5 2 23 734 755 733 755 0.97 10 11 1.2e-05 0.0012 20.1 1.5 1 23 761 783 761 783 0.97 11 11 0.031 3.1 9.4 0.1 1 23 789 813 789 813 0.93
Sequence Information
- Coding Sequence
- ATGAACCAGTGTTGCTTCATATGCAACACCAGGCCTGGCCTCTCAGTAAGGAATGCTTCAAGTCTATTTGATGAGCAAaatTTATTGCAGTCAGGCAAGAAACTAGCGCAGGTTGTGGGTGATATTGTGGGCAAGCCTGTGGTACAGAATAAAGTTCACACcagtatattatgtaaaaaatgccTGAAATCATGCACTGAGTATGATAGCATTCAAGTCAGATTACAGACAATAAAAGAAGACTTACTAGGACAATTCAGGCAGTCATTACCTCAGCATAATTTAGACTATGACAACTATGAGAAGAATGTGTGTTCTCCGCCAAAACCAAACCCTTTATTGGGGAAGAAGCTTGTGTTGCCAGCATCTAAATTACAACCAATACCTCCAGATTTATTGCTCAAAGTGGGAAAGTTAGCATCTTTCTCTAAAGCtaatatgattttaccacaaattaAGCCAACTACAGCCTCAACATTAAATCTAAAAGTAACCGTAGGATCTTCAGTCCtaacacaaacaataaaaacaacaaacactAAACCAATAGAGAAACCAACATACGACTCAAATTCGATCCTCAATTCACTCACAAACGCCTTAAAAGATGACCTTGAAAGTCTGGTGACAGTACAAAGTAATATGAACTCTATGAGCCCAAAGAATTCAATATTGAGCTTCAATGTAGATTCTTTGCCTAAGGATTTTCTTTCTGGAGCTATTTTGAGAAAGATTGATGAAAAGGATGATGAGTTTGGAAAGGGTGATGAGGCGAATGATGATCATCCGATGGAAATTGATGAAGattgTTTGTCTGTGGTTCCTGTGACGTCAGCAGATGGAAACATGGTGCTACAAGTTGAAGGACTACAGGAGTCAAAATCGGACCCAACGCCGGCTGTCAGCGAGTATCTGAACCTCCCGTCACTGGACGGAAGTGATGAAGTGACGGACGCACAGAAGTACATCCTCGGCAAGCTGGAGATACTCAACgaaggtgatgatgatgatgatgatgatggtgaaggACataCTATTGTAGTGGACAGCGAGAACGGTTCCATACTCCGGATGGTCGCCGGACAGAAGTTTATCTACGAGGGCGGAGAGATATCACTGGTGATGCCTGAAGATGATGAGCATCAGGACGGTGAAGATGATGGTCATCAACAGGACAATGGTGATAGTCAAGACTCTAATGATGAATCTCAGATCGAGTTACAAGTATCAGGAGACGAGGAAACTGCGAACGCTATTATTGCGGCCGCTCAGGAACAAGGAGGTGCTTTCATAAAGGTGGAATCCGGTGAGATGTACCGCGTGAAGTCAGTATCGAGTACGAATTCGGACAATACGATGCCGCTACAGATGGTCGCGCATCACGGAGACTTGTTCAAGTGTCTGCTGTGTGAGAAGAATGATGAAAACACTCCACTTGAAGATGCTGATACAATGATGCGTCATCTGAAAACACAACACGACGCCAGAATATACTTGTGTCGGTTCTGTGGCGCGGTCATGAGGAAACGGACGGAATACGCAACGCATATAGCGTCCCACGCGCCCTCGTCCACCGCTGGGCCAGCCCGCGCGGGCCTGCACCGCTGTGCGACGTGCGGCAAGTGCTACAGCTCGCGCGCGCTGCTGGCCGAGCACGACAACATCCACCGCGGAGCGCGCCCGTACGTGTGTACCAGCTGCGGGAAGGCGTTCGCCTCCAAGTACACGCACCAGGCACATCTCAAGACTCATGCGGTTCGCCCGCGACCCTACAAATGCAGTCAATGCGGCAAATCGTTCCTTACCCAGCAAAATCTAAATCAACATGAGAAAACACATTCAGGAGTCAAAGATTTCGTCTGTAATATATgcaacAAAGCGTTCAGTACACAGCACAATTTGGAAGTCCACGGTGTGGTGCACTCCGGGAACAAGGCGTTCGTGTGTACTGTGTGTCGGAAGGCATTCGCAAGGATGGCTGAGCTCAGGGACCACACGAGGATACATACCGGCGAGCGTCCATTTGCGTGTGACATCTGCGACGCACGTTTCACTCAGCGCTCGAACCTGCACTCACATCGACGTGCGACTCACTTCGACGACAAGCGGTACCACTGTGAACTTTGTCCCAAGAGGTTTAAAAGGAGGAGGCTCCTGGAGTACCACATCAAGGCGTCCCACACGGGAGAGCGTCCTCTGAAGTGCGGCGTGTGTCAGCTGACGTTCGTGTACCCCGAGCACTACAAGAAACATGTGAGGACGCACAGCGGGGAGAGACCATACACTTGTGagATCTGCGGCAAGTCGTTCAACTCCCGCGACAACCGCAACACTCACCGCTTCGTGCACAGCGACAAGAAACCGTACGAGTGTGTCGCGTGCGGGGCGGGATACATGAGGAAACAACTACTGTACGCGCACATGAACACCAGCggTCATTTGAACGGGTCTATAGTCGTAAATCAACCTAGAGTTATCAAAGTTACTGAAgGCACAAATCAACCTGTAGAAATAACTAATGTCGAAGCGAAGAATACTAAGTTTGATGCGATATTTGGAAGCAGTGAGTTGGAAGCGAGCGTCAATTctgTGAAAGCGGAAGAGGAAGTGAAACTAGAAGATGCCAAGTTCTACATAACAGAAGATAAGAAGTTAATATTACAAGATAGTGATAAAACGACTCTTAATCTTATACAAGAAGGAGATGAGCCGACGTTACTAACTATACATAATATAGGAGAGAGAGCCGAGGGTACTATTCTAGAAGCAGTAGACGCTGATCAACTTGGAGAACAGACTGAgATAGTAGCAAATGACGAAAACGGtggcatggtgagacttatacAGATCAAGCTGCCTGATGGAAACAATGGATGGGTTGCCATCAATCGatga
- Protein Sequence
- MNQCCFICNTRPGLSVRNASSLFDEQNLLQSGKKLAQVVGDIVGKPVVQNKVHTSILCKKCLKSCTEYDSIQVRLQTIKEDLLGQFRQSLPQHNLDYDNYEKNVCSPPKPNPLLGKKLVLPASKLQPIPPDLLLKVGKLASFSKANMILPQIKPTTASTLNLKVTVGSSVLTQTIKTTNTKPIEKPTYDSNSILNSLTNALKDDLESLVTVQSNMNSMSPKNSILSFNVDSLPKDFLSGAILRKIDEKDDEFGKGDEANDDHPMEIDEDCLSVVPVTSADGNMVLQVEGLQESKSDPTPAVSEYLNLPSLDGSDEVTDAQKYILGKLEILNEGDDDDDDDGEGHTIVVDSENGSILRMVAGQKFIYEGGEISLVMPEDDEHQDGEDDGHQQDNGDSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVSSTNSDNTMPLQMVAHHGDLFKCLLCEKNDENTPLEDADTMMRHLKTQHDARIYLCRFCGAVMRKRTEYATHIASHAPSSTAGPARAGLHRCATCGKCYSSRALLAEHDNIHRGARPYVCTSCGKAFASKYTHQAHLKTHAVRPRPYKCSQCGKSFLTQQNLNQHEKTHSGVKDFVCNICNKAFSTQHNLEVHGVVHSGNKAFVCTVCRKAFARMAELRDHTRIHTGERPFACDICDARFTQRSNLHSHRRATHFDDKRYHCELCPKRFKRRRLLEYHIKASHTGERPLKCGVCQLTFVYPEHYKKHVRTHSGERPYTCEICGKSFNSRDNRNTHRFVHSDKKPYECVACGAGYMRKQLLYAHMNTSGHLNGSIVVNQPRVIKVTEGTNQPVEITNVEAKNTKFDAIFGSSELEASVNSVKAEEEVKLEDAKFYITEDKKLILQDSDKTTLNLIQEGDEPTLLTIHNIGERAEGTILEAVDADQLGEQTEIVANDENGGMVRLIQIKLPDGNNGWVAINR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00726717;
- 90% Identity
- iTF_00041137;
- 80% Identity
- -